| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0066 |
|---|
| Symbol | |
|---|
| ID | 4017189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 73136 |
|---|
| End bp | 74272 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637954039 |
|---|
| Product | transport protein, putative |
|---|
| Protein accession | YP_561086 |
|---|
| Protein GI | 91791435 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TAATACTTTC TATGGTTCGT AAAGAACTTA TCGATGCCGG CCGAGATAAA
CGCTCTGTGA TGGCAGGCCT CTACTACGCA ATCGGCACGC CTATCATAAT GTGCGGCTTG
TTTATGGTGC TGATCACTCA GCTCTCAAGC CCAGATACCT TGGCGATTAA GATAGAGCAG
CCCCAAAACG CCCCCGATCT CGTGCGCTAT TTAGAGCAAG CCGGCATTAG TCACAGTGAT
GGCGATGATG TCAAAGCCAT AAGCCTGATT ATCAGTGATG ATTACGCCGA GAAAATGGCT
AAGGCGCAGC CCGCTGTGGT GACCCTGATT GCCGATAAAT CCAATGAGAA ACTGCAAAAC
TCCATTCGCC GGGTCGAGAC CAAGCTGCAA GCCTATAGCG GTGAGATGGG TAGCCTGCGC
CTTATTGCCC GCGGCATAAG CCCACAAGTG ATGCGGCCCT TAAAAATCAA AGTAGAAGAT
CAGGCCACTG CTGATTCAAA AGGCGGCGTT ATCTTAGGCA TCGCGATTTT CACCATGATT
TATTCGGTAT TTATATCTGG GATGAATTTG GCTATCGACA CCAGCGCTGG GGAACGCGAG
CGTAACTCGC TGGCGTTGTT GCTCAGCCAC CCTATTACCA CCAGACAGTT GGTGATGGGA
AAAGTGATTG CCGTCACTTG CTTCGCACTG CTTGGCCTTG CGCTTATCTT GCTGGTATCA
AAAATCGCTT ACCCCTTCGT GCCTTGGCAA GAGCTAGGTT TTAGCGTCAA CATCAGCAAT
AGCTTTATGG CACTCATGTT TGTCATTGGT ATTCCGCTGG CCATCATGGC GGCAAGCCTG
CAGTTGTTTG TGTCTTTTAT GGCAAAAAGC TTCAAAGAAG CCCAATCCTA TTTAACCATA
GTGTTATTTG TGCCCTTGGC ACTTTCTATG GCTGCCAGTT ACAACATAGC GCCGGATGTA
TTGGAGTGGC TGCCAGTCTC AGGCCAACAG CAAGCCTTAA TGGACTTTAT TAAGGGCCGT
GATATGTCAT TACTGCAATT GGCCGTGTCA TCCTTCACTA CCTTAGCCAT TTCGTTGGGA
TTAATTTGGG GATTAGAAAA GTCCCTGAAG AGTGAAAAAG TCGTCTTTGG TCTTTAA
|
|---|
| Protein sequence | MKNLILSMVR KELIDAGRDK RSVMAGLYYA IGTPIIMCGL FMVLITQLSS PDTLAIKIEQ
PQNAPDLVRY LEQAGISHSD GDDVKAISLI ISDDYAEKMA KAQPAVVTLI ADKSNEKLQN
SIRRVETKLQ AYSGEMGSLR LIARGISPQV MRPLKIKVED QATADSKGGV ILGIAIFTMI
YSVFISGMNL AIDTSAGERE RNSLALLLSH PITTRQLVMG KVIAVTCFAL LGLALILLVS
KIAYPFVPWQ ELGFSVNISN SFMALMFVIG IPLAIMAASL QLFVSFMAKS FKEAQSYLTI
VLFVPLALSM AASYNIAPDV LEWLPVSGQQ QALMDFIKGR DMSLLQLAVS SFTTLAISLG
LIWGLEKSLK SEKVVFGL
|
|---|
| |