| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0007 |
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| Symbol | |
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| ID | 4017799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 8431 |
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| End bp | 11172 |
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| Gene Length | 2742 bp |
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| Protein Length | 913 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637953977 |
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| Product | Na-Ca exchanger/integrin-beta4 |
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| Protein accession | YP_561027 |
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| Protein GI | 91791376 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5276] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTTTA CCCTATTAAT TAAGCCATAT ACTTTTGGCA TAGGTTTGTT GTCATTGGCA
GGCTTTCTGA GCCAAGGCGC TTTTGCGCAT TCTGAGCATG ACAAGGCGCG CTTTGTGAGT
GAAAAAGGTC AAGATGTTGG CTTCTGTGAC AACGCCTTGC GCCCATGCCA AACGATTGCT
TATGCGGTAA CTCACGCTAA TAAAGGGGAT AGGGTATTAG TGGCCGATGG TTATTATCAA
ATTCGCGATA TCGATGAGTT GTTTTTGCTC ACCAGTGAAA TCGTCCCGGT AATGGGGGGA
TTCAATCGTT ACGATCATTA CTTGTCTCAA GCTCCACAGC TCAATACCAC AGTTTTAACG
GGGGTGCCTT CTGAGTTTGC ACAGCGCCTG GAAGCGAGAG GCTTTAGGGT GATAAGTGAT
GGTATCGGTC AGTACGGCAC TGAACTCGAT GAAATGCTGG CAACCCAGCA AGGCTTACAA
CAAGATCATG CCAGCGCAAC TTGTACAGCA GGCAAAGCGG CAGGCTTTAA TTGTAATGCC
ATAGATTTAG TCTCTCATAT TGCCTTAGGC AGCTTTTCTT CAAAGCCCAA TGCTGCCAAT
GATATTTGGG GCCATGTTGA TCTTAATACT GGCACTGAGT ACGCCATCAT AGGGTTAGTG
AATGGCACTG TGGTAATGAA CCTTAGTGAT CCTGCCAACC CAGTGGAAGT GGGTACAGTT
ACTGGGAGTC GTACCACTTG GCGTGATATC AAGGTTTACC AATGGTTCGA TGCCAGTGTT
TCGCGCTGGA AAGCCAATGC CTATGTGACA TCTGAAGGTT CAGATAATAT ACAAATTATC
GATTTAAGTC AGTTACCTCA CTCGATATCT AAGCTGGCGA CCGACACGGT CGAAGGCTCT
GCGCACAATG TCTATATCAG TAATCTTGAT TACACGACTA ACACAGCATT AACGGGTTTA
ACTCCCCAAC TGCACATTGT GGGTCAAAAT AGTGCAGGCG GCGCATTTAA GAGTTATTCC
TTAACTAACC CCGCAAAGTT GAGTGTAAGT TTTAGCCATA GCGGTGCAAC GCGAGCCGAT
TATACCCACG ATGTCAGTTC TATGGTGGTG GACGATGCGA GGGCACAGGC CAGTTGTCAG
ACGCAAATTT GTACCGTGCT GATGGATTTC AATGAAACTA GCATGAGGTT GTGGAATATC
ACCACTCCTG CCAGCAGTAA AACCTTATCA GACGTCACCT ATGCCAATGC CGAATATGTT
CACTCTGGTT GGTGGAGTGA AGATAAACGC TATGTGTTTG TTCATGATGA GCTCGATGAG
CAAAGAGCTG GTCTGAATAC CACCCTAAGG GTATTTAACG TCGATGACTT AGGTGCGCCA
GATTTAGTCA AAGTTTGGAG TGGGCCGACT AAAGCCATAG ATCACAACGG TTTTGTCAGA
GGCAATCGTT ATTACATGTC TAACTATCAG CGTGGGGTAA CCATATTGGA TATTAGCCAA
GCCGATGATC CTAAGGAAGT AGGCTATTTC GATACCTTTC CCGCCTCCGA TAGTAATGCG
TTTAATGGAG TGTGGGGGGT GTATCCCTAT TTACCATCAG GCTTAGTGCT TGCCAGTGAT
ATTAACAGTG GCCTGTATAT TCTTAGGGAC AAAAGCTTAA ATAGTGCTCA AGGTTCAAGT
TCCTTTGTCG CTGCCGCATC TGCCAGTAAT GCTGGCGATG TGATGAATAT TAGCGTGCAG
CGCCCTCAAG GTAGTGGCGT TGTGAGTGTC GGTTTTGAAA CTTTGTCGGC AACCGCCGTA
GCAGGGCGTG ATTTTGAAGC TGTGAATGGC AGATTATCTT GGGCGGCTGA TGATCATAAT
GCCAAACAAA TCAGTATCAC AACCTTAGAT AGCGGCCAGA ATAAAGCGCT ATTGGCGTTT
GTGCGCTTAT TTGATCCTAG AGGCGGTCTA ACGCTTGCGA GCCCAAGTTA TCATCAACTT
AATATTGGTG AGGATGTGCC TCAAGCAGGC AGTTTGGGCT TTGCCAGTGC TACAGCCTCT
GTGGTTGAGG GGGCGAGTCT GAGTGTTGCT GTATTAAGAA GTGGCGGCAG TGCTGGCGAG
CTTAGGCTTG CCTATGGCCT TGAAAGTGGC ACGGCTATAG TAGGTCAAGA CGTAGAGGCG
CTTTCCGGTG AGTTGGTGTG GGGCGATGGT GATAGCCAAG TGAAGCACAT CCAAGTTAAC
ACCCTAGAAG ATACTGATAT CGAAGCTGAT GAGGATTTTT TGGTTACACT GGGAAGTTTA
GCGGGTAGCC AAATCTCCAC TGCGAGCTTA ACCGTAACCC TAACCGATAA CGATAGACTT
AACACTGCGC CCACAGTCAG TGCGGGGGAG AACCGTGAGG TTAATGGGGG GGCAACCGTG
ACCTTAACAG CACAAGCAAC GGATGCTGAA AATGATGCCA TTAGCTATGC ATGGCAGCAA
ACTAGCGGTG AAAGTGTGAC CTTGAGTAAT GCTAATACGG CGAGTGCTCA ATTTGTTGCC
CCAGCGATGG ATGCGAGTTT AGTGTTCACT GTGACAGCTA CGGATGCGCT GCAAAGTAGC
ACTCAAGCCA GCGTGACGAT AACTGTGAAA GCCGCAGTGG TTGCTCTCCC TGAGGTGAAA
GTTGTAGAAC CCAGTTCGGG TGGTGGTAGC TTAGGCAGTT TGAGTTTACT CTTGTTAGCC
GGCTTAGGCA TAAGGCGTCG ATGCAATAAA ATAGCCGCTT AA
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| Protein sequence | MAFTLLIKPY TFGIGLLSLA GFLSQGAFAH SEHDKARFVS EKGQDVGFCD NALRPCQTIA
YAVTHANKGD RVLVADGYYQ IRDIDELFLL TSEIVPVMGG FNRYDHYLSQ APQLNTTVLT
GVPSEFAQRL EARGFRVISD GIGQYGTELD EMLATQQGLQ QDHASATCTA GKAAGFNCNA
IDLVSHIALG SFSSKPNAAN DIWGHVDLNT GTEYAIIGLV NGTVVMNLSD PANPVEVGTV
TGSRTTWRDI KVYQWFDASV SRWKANAYVT SEGSDNIQII DLSQLPHSIS KLATDTVEGS
AHNVYISNLD YTTNTALTGL TPQLHIVGQN SAGGAFKSYS LTNPAKLSVS FSHSGATRAD
YTHDVSSMVV DDARAQASCQ TQICTVLMDF NETSMRLWNI TTPASSKTLS DVTYANAEYV
HSGWWSEDKR YVFVHDELDE QRAGLNTTLR VFNVDDLGAP DLVKVWSGPT KAIDHNGFVR
GNRYYMSNYQ RGVTILDISQ ADDPKEVGYF DTFPASDSNA FNGVWGVYPY LPSGLVLASD
INSGLYILRD KSLNSAQGSS SFVAAASASN AGDVMNISVQ RPQGSGVVSV GFETLSATAV
AGRDFEAVNG RLSWAADDHN AKQISITTLD SGQNKALLAF VRLFDPRGGL TLASPSYHQL
NIGEDVPQAG SLGFASATAS VVEGASLSVA VLRSGGSAGE LRLAYGLESG TAIVGQDVEA
LSGELVWGDG DSQVKHIQVN TLEDTDIEAD EDFLVTLGSL AGSQISTASL TVTLTDNDRL
NTAPTVSAGE NREVNGGATV TLTAQATDAE NDAISYAWQQ TSGESVTLSN ANTASAQFVA
PAMDASLVFT VTATDALQSS TQASVTITVK AAVVALPEVK VVEPSSGGGS LGSLSLLLLA
GLGIRRRCNK IAA
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