| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_4013 |
|---|
| Symbol | trmE |
|---|
| ID | 3967432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 5053337 |
|---|
| End bp | 5054707 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637923110 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_529480 |
|---|
| Protein GI | 90023653 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.205295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.289015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACTC AAACTAATGA GACAATTGCC GCCATCGCCA CGGCCCCTGG TCGTGGCGGT
GTAGGCATTA TTAGAGTCTC CGGCCCCAAA GCCCTCCCCA TTGCGCAACA TATCCTCGGC
ATTACCCCAA AACCACGCTA CGCCCACTAC GGCGACTTTT GTAACGCTAA CGGCGATATA
CTCGACCAAG GTATAGCGCT GTATTTTCCT AACCCGCATT CTTTTACCGG CGAAGACGTA
CTTGAGCTAC AAGGCCACGG CGGCCCGGTA ATTTTGGATA TGCTGTTGGA TGCCGTGGTG
CAAGCTGGCG CACGATTAGC GCGACCAGGC GAATTCTCTG AACGCGCGTT TTTAAACGAC
AAACTCGATT TAGCCCAAGC AGAAGCCATA GCCGACTTAA TAGAAGCCAG CTCGCAGCAA
GCCGCCAAAC AGGCATTAAA TTCTTTAAAA GGTGAGTTTT CTAACAAAAT ACATGAGCTG
GTGGAGCAAC TGATCCATTT GCGCATGTAT GTAGAAAGCG CAATCGACTT CCCCGAAGAA
GAAATAGACT TTTTAAGCGA TGGCATTGTA GAGGGCAAGC TCAACGATGT GATTGATCAA
ACCGACGCAG TTTTAGCCCA AGCGCAACAA GGCGCCCTGC TGCGCGATGG TATGAAGGTA
GTAATTGCCG GCCGGCCGAA TGCTGGTAAA TCTAGCCTAC TTAACGCGCT AGCCGAAAAA
GATATCGCCA TTGTTACCAA CATTGCAGGC ACCACCCGCG ATGTGTTGCG CGAACATATA
CATATAGATG GTATGCCTTT GCATATTATC GACACCGCGG GCCTGCGCGA CAGCCCAGAC
CACGTAGAAC AAATAGGTAT AGAACGCGCC TGGGGCGAAA TAGAAAGCGC CGATCGCATA
CTGCTATTAA TAGACACTAC CGATAACAGC CAGCTGGATG TAAACGTCCA CTGGCCCGAA
TTTACCAGCA ATGCCGCTTA CGCCAAAAAG CTTACCGTTA TCTATAACAA AATAGATGAA
TCCGGCTTTA GTACAACCAA TCACACCAGT GACGCCCCCT ATCAAACACT GCCACTATCT
GCAAAAACCG GAGCTGGCCT AGATACCCTA AAAGCCCACC TGAAAAGCGT AATGGGGTTT
CAGTCCACCA CCGAAGGCGG GTTTAGCGCC CGCCGCCGTC ATATCCACGC CATCGAGCAA
GCCCAAAACT ACCTGCTAAC CGGCCGTGAG CAATTGCAAT TGCACACTGC GGGCGAACTA
TTAGCTGAAG ACCTACGTGC AGCACAGAAC CACCTAAGCG AGATTACCGG TGCCTTTACG
CCCGATGACT TGCTAGGCAA GATTTTTAGT AGTTTTTGTA TAGGTAAGTA G
|
|---|
| Protein sequence | MTTQTNETIA AIATAPGRGG VGIIRVSGPK ALPIAQHILG ITPKPRYAHY GDFCNANGDI
LDQGIALYFP NPHSFTGEDV LELQGHGGPV ILDMLLDAVV QAGARLARPG EFSERAFLND
KLDLAQAEAI ADLIEASSQQ AAKQALNSLK GEFSNKIHEL VEQLIHLRMY VESAIDFPEE
EIDFLSDGIV EGKLNDVIDQ TDAVLAQAQQ GALLRDGMKV VIAGRPNAGK SSLLNALAEK
DIAIVTNIAG TTRDVLREHI HIDGMPLHII DTAGLRDSPD HVEQIGIERA WGEIESADRI
LLLIDTTDNS QLDVNVHWPE FTSNAAYAKK LTVIYNKIDE SGFSTTNHTS DAPYQTLPLS
AKTGAGLDTL KAHLKSVMGF QSTTEGGFSA RRRHIHAIEQ AQNYLLTGRE QLQLHTAGEL
LAEDLRAAQN HLSEITGAFT PDDLLGKIFS SFCIGK
|
|---|
| |