| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3968 |
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| Symbol | |
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| ID | 3967272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 5000366 |
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| End bp | 5001907 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637923065 |
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| Product | F0F1 ATP synthase subunit alpha |
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| Protein accession | YP_529435 |
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| Protein GI | 90023608 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
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| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00212226 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.363418 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACAGC TGAATCCTTC CGAAATTAGC GAAATTATTA AGCAACGGAT AGACAACCTA
GCGGTTTCTA CCGAAGCGCA AAACGAAGGC ACCGTGGTTT CTGTAACCGA CGGTATTATT
CGTATCCACG GTCTTGCCGA TGTTATGTAC GGTGAGATGA TTGAATTTGA AGGCGGTGTT
TACGGTATTG CGCTTAACTT AGAGCGCGAT TCAGTAGGTG CAGTTGTATT GGGTGATTAC
CAAGGCGTTG CCGAAGGTCA GTCCTGTAAG TGTACAGGTC GTATCTTGGA AGTGCCTGTT
GGTGAAGAGC TTTGTGGTCG CGTTGTCGAT GCACTAGGTA ACCCAATCGA CGGTAAAGGC
CCTATTAACG CCAAGAAAAC TGACGCAATC GAAAAAATTG CACCGGGCGT AATTGCTCGT
CAGTCCGTTG ATCAGCCAGT GCAAATTGGT TTGAAAGCAG TTGATACCAT GGTGCCAATC
GGCCGTGGTC AGCGCGAATT GATTATTGGT GACCGCCAAA CAGGTAAAAC AGCTGTTGCT
GTCGATGCCA TCATTAACCA AAAAGGTACA GGTATTAAAT GTATCTATGT GGCTATTGGT
CAAAAAGCAT CGTCTGTTGC ATCTGTTGTG CGTAAATTAG AAGAGCACGG CGCAATGGAT
CACACCATTG TTGTTGCTGC TACCGCTTCT GACCCAGCAT CTATGCAGTT CTTGGCTCCT
TTTGCGGGCT GTACTATGGG TGAATACTTC CGCGATCGCG GCGAAGACGC ACTTATTATT
TATGATGATT TGACTAAACA AGCTTGGGCT TACCGTCAAA TTTCTTTGTT ACTACGTCGT
CCACCAGGCC GTGAAGCCTA CCCAGGTGAC GTTTTCTACT TGCACTCACG CTTACTTGAG
CGCGCTGCAC GTGTAAACGC TGACTACGTA GAGCAACTCA CCAACGGTGA AGTGAAAGGT
AAAACCGGTT CTTTAACCGC ATTGCCAATC ATCGAAACTC AAGCTGGTGA CGTTTCTGCA
TTCGTACCTA CCAACGTAAT TTCTATTACC GATGGTCAGA TCTTCCTTGA AACAGACCTA
TTCAACGCCG GCATCCGTCC TGCAATGAAC GCAGGTATCT CGGTTTCTCG TGTTGGTGGT
TCTGCTCAGA CTAAAGTAAT TAAGAAATTG TCTGGTGGTA TTCGTACCGC ACTTGCGCAG
TACCGCGAAT TGGCGGCTTT CTCTCAGTTT GCATCCGATT TGGACGAAGC AACCAAAGCT
CAGTTAGAGC ACGGTGAGCG CGTAACCGAA TTGATGAAGC AAAAGCAGTA CTCTCCACAA
AGCGTGGGTG AAATGGCTGT TGTTGTTTAC GCTGCGAACG AAGGCTACTT GAAAGACGTA
GAAGTTTCCA AAATTGGTGA TTTCGAATCT GCATTGCTGT CTTACATGAA CAGCTCGCAC
GCCGATTTGA TGAACACCAT GAACGGCGGA AGCTACAGCG ATGAAATCGC TGGGCAACTG
AAGTCTGCTT TGGATACCTT TAAAGCCACG CAAACTTGGT AA
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| Protein sequence | MQQLNPSEIS EIIKQRIDNL AVSTEAQNEG TVVSVTDGII RIHGLADVMY GEMIEFEGGV
YGIALNLERD SVGAVVLGDY QGVAEGQSCK CTGRILEVPV GEELCGRVVD ALGNPIDGKG
PINAKKTDAI EKIAPGVIAR QSVDQPVQIG LKAVDTMVPI GRGQRELIIG DRQTGKTAVA
VDAIINQKGT GIKCIYVAIG QKASSVASVV RKLEEHGAMD HTIVVAATAS DPASMQFLAP
FAGCTMGEYF RDRGEDALII YDDLTKQAWA YRQISLLLRR PPGREAYPGD VFYLHSRLLE
RAARVNADYV EQLTNGEVKG KTGSLTALPI IETQAGDVSA FVPTNVISIT DGQIFLETDL
FNAGIRPAMN AGISVSRVGG SAQTKVIKKL SGGIRTALAQ YRELAAFSQF ASDLDEATKA
QLEHGERVTE LMKQKQYSPQ SVGEMAVVVY AANEGYLKDV EVSKIGDFES ALLSYMNSSH
ADLMNTMNGG SYSDEIAGQL KSALDTFKAT QTW
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