| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3756 |
|---|
| Symbol | |
|---|
| ID | 3966791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4756252 |
|---|
| End bp | 4756833 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922853 |
|---|
| Product | permease protein |
|---|
| Protein accession | YP_529223 |
|---|
| Protein GI | 90023396 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.969395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCCT TAAACAGCTC TAGCCCGCCT TGGCTTTTCC GCTTCGTTCA ATCAATAGTT
ACTGCAATAA ATGCACTAAA TGCGCTTTTA GGCCTTTGCG CGGCATGGTT GAGTGTAATG
CTCGTTGTGC TTATGTCTTA CATTGTTATT AGCCGCGCCT TGTTCGATAC TGGCTCGCTT
GCGCTGCAAG AAAGCATTAC ATACGGCCAC GCCGCGCTGT TTATGCTGTG CATGGGCTAC
ACCATTATTT TGCGGGGGCA CGTACGTGTA GATGTATTCT ACCGGCGCTT TTCACCGCTA
AATAAAGCTT GGGTGGATGC ACTGGGGGGC TTATTACTGC TGTTGCCGTT CGCACTATTT
ATGACATATG TCAGCTGGGA CTTTGTAGTG CGCGCTTGGC AAATTCGCGA GGCCTCTAGC
GACCCCGGCG GTTTAACCAT TGTGTATTGC CTTAAAACGC TTATGCCAGT AACAGGCATT
TTACTCGCCC TACAGGCGCT AAGCGAAGTG CTAAGAAACC TACTTAAAAT TACCTATATT
TACGAAGATA GCGCCGATAA CGAGGAAGAT AGCCCATGTT AG
|
|---|
| Protein sequence | MPSLNSSSPP WLFRFVQSIV TAINALNALL GLCAAWLSVM LVVLMSYIVI SRALFDTGSL
ALQESITYGH AALFMLCMGY TIILRGHVRV DVFYRRFSPL NKAWVDALGG LLLLLPFALF
MTYVSWDFVV RAWQIREASS DPGGLTIVYC LKTLMPVTGI LLALQALSEV LRNLLKITYI
YEDSADNEED SPC
|
|---|
| |