Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3727 |
Symbol | |
ID | 3966762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4724878 |
End bp | 4726119 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637922824 |
Product | cold shock protein |
Protein accession | YP_529194 |
Protein GI | 90023367 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.701014 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.664331 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAGTT CCCGTACGGC ACTGCGCATT ATATTTTTTA TTTTGCTCCT CGACATAATG GGCGTAAGCC TACTGTGGCC GGTGGCGGCA TTTATTGTGC AGCAATATAG CAACGATGCC ATTATGCTTA CGGTATTAAC CGCACTGTAT TCGGCAGCGC AGTTTTTTGC CGCACCATTT ATGGGTAGGC TAGGTGATAG TTATGGTCGG CGGCCAGTGC TTATTATTAG TTTGCTCGGT TCTTGTATTG GCTACATTAT GTTTGGTGTG GGTGGCGCTT TGTGGGTGTT ATTAATTTCA CGCCTATTAG ACGGGTTTAC TGCGGGCAAT CAATCTGTCG CGGGCGCTTA TATAGCAGAT GTTTCAACAC CCGAAACTAG GGCTAAAAAT TTTACGTTGT TTGGAATGGC CTGGGGTGTT GCATTGGTGG CTGGGCCAGC ATTGGGGGCA GTGTTTGGCG AAATAAGCCT CGCCGCGCCC GCCTTTTTGG CTGCGACCCT CTGCTTACTG GCTGCGCTAT TAAGTTACTT TTATTTGCCA GAATCTTTGG CTCGCGAAAA CAGAAATTCC ACGCCAATAA AATTGGCAGA CATCAACCCT TTTACCACTA TTATTAAGCT GCTCTCCAAA CCGGTGCTAG GCTCTATATT TGTTGTACTA ATACTGTTTA ATTTTGTTTT TAACGGTTTC AGTAGTACAG AGTCACTATA CTTAGTAGAA AAATTTTCAG CTACACCGCT ACAACTTGGC GGGCTACTTA CTTTCGCAGG CCTTTCTCTG GTAGCAATAC AAAAAATACT ACCGCCACTT ATTAAGCGCT TTGGCCACCA ACGCGTTGCT GTTGTTAGCT TAATCGCTTT AGCGATAATG GCAACAATAA CATCTATCAC ACCGGCGTTT AATCTTTTGT TTGGGGTTGT TTCATTGCGC ACTATGGCCG CTGGCTTTTT ATTTCCAATT TTAGGTGCGC TAATGTCCTC TATGGTTACC CCCAAAGAAC AAGGCGCCTT AATGGGCGTA AATACAGCAT TACACAGTGC TACTTATGTT TTTGGGCCAA TATGGGCGGG ACTTGTTTAC GATCATCTTC ATGCAAGTTC GCCCTACTGG CTAGGTGCGG TAATATTACT ATTAACCGCC CTGTATTTAT CTCGCGTGCG TTTATCACCG GTAAACCAAC CTTTAAATAA ACCAAATAAT GACACTAGTA GCACATCTAA TTTAACACCC GCTTCAGATT AA
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Protein sequence | MESSRTALRI IFFILLLDIM GVSLLWPVAA FIVQQYSNDA IMLTVLTALY SAAQFFAAPF MGRLGDSYGR RPVLIISLLG SCIGYIMFGV GGALWVLLIS RLLDGFTAGN QSVAGAYIAD VSTPETRAKN FTLFGMAWGV ALVAGPALGA VFGEISLAAP AFLAATLCLL AALLSYFYLP ESLARENRNS TPIKLADINP FTTIIKLLSK PVLGSIFVVL ILFNFVFNGF SSTESLYLVE KFSATPLQLG GLLTFAGLSL VAIQKILPPL IKRFGHQRVA VVSLIALAIM ATITSITPAF NLLFGVVSLR TMAAGFLFPI LGALMSSMVT PKEQGALMGV NTALHSATYV FGPIWAGLVY DHLHASSPYW LGAVILLLTA LYLSRVRLSP VNQPLNKPNN DTSSTSNLTP ASD
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