| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3683 |
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| Symbol | rph |
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| ID | 3966679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4665499 |
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| End bp | 4666218 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637922780 |
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| Product | ribonuclease PH |
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| Protein accession | YP_529150 |
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| Protein GI | 90023323 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0449428 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGAC CAAGTGGCCG CGCTCCAGAA CAACTACGTG ACGTAACTAT TACTCGTCAG
TTTACTCGTC ACGCTGAGGG CTCTGTTTTA GTTTGCTTTG GCGATACCAA GGTTATATGT
ACGGCCTCTG TAGAAGCCGG TGTGCCCCGC TTTTTAAAAG GGCAGGGGCA GGGTTGGATA
ACAGCAGAAT ACGGGATGTT GCCGCGTTCT ACGGGCTCGC GTATGGGGCG TGAAGCTGCA
CGCGGTAAGC AGGGTGGGCG CACGGTAGAA ATCCAGCGTT TAATTGGCCG CTCTTTGCGC
GCCGCTGTCG ATTTAACGGC ACTGGGTGAG CATTCTATTG TAATAGATTG CGATGTTATT
CAGGCCGATG GTGGCACGCG AACTGCTTCT ATAACCGGTG CACTTGTGGC GTTGGTAGAT
GCCATTCGTT ATTTGCAGCG CGAAAAAATG ATTACCACCG ACCCGTTAGT GCATATGGTT
GCAGCGGTTT CTGTGGGTAT TTATGAGGGC GTGCCGGTGT TGGATTTGGA TTACCCAGAA
GATTCCAACG CAGAAACCGA TATGAATATG GTGATGACAG AGGAAGGCGG CTTGATTGAA
ATTCAAGGTA CTGCCGAGAA AAAACCGTTC ACCGATGAGC AGTTTGCGGG CATGTTTAGC
TTAGCTAAGA AAGGTGTGGC GGAATTGGTT GCGTTGCAGA AGGCCGCTTT GGCGCAGTAG
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| Protein sequence | MQRPSGRAPE QLRDVTITRQ FTRHAEGSVL VCFGDTKVIC TASVEAGVPR FLKGQGQGWI
TAEYGMLPRS TGSRMGREAA RGKQGGRTVE IQRLIGRSLR AAVDLTALGE HSIVIDCDVI
QADGGTRTAS ITGALVALVD AIRYLQREKM ITTDPLVHMV AAVSVGIYEG VPVLDLDYPE
DSNAETDMNM VMTEEGGLIE IQGTAEKKPF TDEQFAGMFS LAKKGVAELV ALQKAALAQ
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