Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3667 |
Symbol | |
ID | 3966624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4649482 |
End bp | 4650408 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637922764 |
Product | hydroxymethylbilane synthase |
Protein accession | YP_529134 |
Protein GI | 90023307 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.135779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.514748 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA TCCGAATCGC CACCCGCAAA AGTGAGCTCG CCCTGTGGCA AGCCAACGAT GTAAAAGCCA AATTAGAAGC GCTTTACCCA AGCCTAGAGG TAGAGCTATT CCCTCTTGTG AGCCGCGGCG ACAAGATTCT AGATGTGCCA TTGGCAAAAG TGGGTGGTAA AGGCTTATTT GTAAAAGAGC TCGAGCACGC CCTGCTGGCA GATGAAGCCG ATATCGCCGT GCACTCCATG AAAGATGTGC CCATGGAATT CCCAGAGGGC CTTGAGCTTG CAGTTATTTT AGAGCGCGAA GACCCGCGCG ATGCGTGGGT GTCTGCGGGG TATGAAAATT TAGATGCGCT GCCAGCTGGC GGTGTGGTGG GTACATCAAG CTTGCGCCGT CAAAGCCAAA TACTGGCGCG CAGGCCCGAT ATAACCGTAA AGTTTTTACG CGGTAACGTA AACACACGTC TGGCTAAATT AGATGCAGGT GAGTACGACG CCATTATCCT TGCGGCTGCC GGTTTGAAAC GCCTAAAGTT TGGCGATCGC ATTCGCAGTT ATTTATCGCC AGAAGAAAGC TTGCCTGCGG GCGGGCAAGG TGCGGTTGGT ATAGAGTGCC GCAGCGCAGA TAGTGAAACC CTAAAATTAT TACAAGCATT ACACCACACA ATAACCGCCG AGCAAGTACT TGCCGAGCGC GCAATGAACC GCCGTTTAGA AGGGGGCTGC CAAGTGCCTA TAGGTTGTTT TGCTGTTCAC CAAAATAACC AGCTTTGGCT GCGCGGCCTA GTGGCAGACC CAGATGGTAG CAAAGTGATT TATGATGAAA TGACAGGCGC TGCCGCCGAT GGCGAAAAAA TGGGCGTAGA GCTTGCAGAA AAATTATTGG CCGCGGGTGC CGACAAAATA TTAAAAGCGG TATATGACAA CCAATAG
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Protein sequence | MKKIRIATRK SELALWQAND VKAKLEALYP SLEVELFPLV SRGDKILDVP LAKVGGKGLF VKELEHALLA DEADIAVHSM KDVPMEFPEG LELAVILERE DPRDAWVSAG YENLDALPAG GVVGTSSLRR QSQILARRPD ITVKFLRGNV NTRLAKLDAG EYDAIILAAA GLKRLKFGDR IRSYLSPEES LPAGGQGAVG IECRSADSET LKLLQALHHT ITAEQVLAER AMNRRLEGGC QVPIGCFAVH QNNQLWLRGL VADPDGSKVI YDEMTGAAAD GEKMGVELAE KLLAAGADKI LKAVYDNQ
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