Gene Sde_3653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3653 
Symbol 
ID3966610 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4631549 
End bp4633663 
Gene Length2115 bp 
Protein Length704 aa 
Translation table11 
GC content50% 
IMG OID637922750 
Productmercuric reductase, membrane-associated 
Protein accessionYP_529120 
Protein GI90023293 
COG category[C] Energy production and conversion
[S] Function unknown 
COG ID[COG0398] Uncharacterized conserved protein
[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0190427 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCTA AAAAAATTGG AGTGCTGTTA GTTGTTGCGC TGTGTGTATG CGCGTTCTTT 
TATTTTGATT TAGACCGCTA TATTGCCGTG GGTTTAATGC GCGATTGGGT GGCGCAATCG
CCGGTTATGG CATCCACCAT TTTTGCCCTA CTGTATTTTA TGGTTGCCGC ACTTAGCTTA
CCCGGTACTG GTGCCATGAC GTTGCTGGCC GGTGCTGTGT TTGGGTTGTG GTGGGGCTTT
TTATTGGTGA GCTTCGCCAG CACCATTGGT GCCACGGTTA ATATGTTGGT ATCGCGGCTT
TTGCTGCGCG ATTGGGTAAC CCGTCGTTTT CGCACAAGCT TAGAACGCGT TAACGAAGGG
GTAGAGCGCG AAGGCAGCTT TTATTTGTTT TCTATTCGCT TAATTCCCTT GGTGCCCTTT
TTTGTTGTGA ACCCCGTATT CGGTTTAACC AATATGCGCG CAACAACCTT TTATTGGGTA
AGCCAAGTAG GCATGGTGCC GGGCACATTG CTGTATGTGA ACGCGGGGGT AGCGTTAGGG
GCGTTAGATT CCATTTCTAT GGGGGCAATT TTCACCCCGC AAATTATAGG TTCTTTGGTT
TTACTTGCTC TGTTTCCATG GGTGGCAAAA GCGATTGTGG AAGCGGTTAA ACGCAAGCGC
ACCTTGGCTA AATATAAAAA GCCCAAGCAC TTTGATGCCA ATTTAATTGT GATTGGTGCT
GGCAGTGGTG GTTTGGTGGC GGCTTATATT GCCGCGGCGG TTAAAGCAAA AGTGATATTG
GTAGAAAAAG ATTTAATGGG CGGCGACTGC TTAAATACCG GTTGTGTACC GAGCAAGGCA
CTTATTAAAG CCGCTAAAGT GGCCCATCAA ACACGCAACG CGCAGCACTT GGGGATAAAC
GCCCAGCCAG AGATTGATTT TGCCAAGGTG ATGCAACACG TAAAAGGCGC GGTTAAGCAA
ATAGAGCCGC ACGACTCGGT GGAGCGCTAC ACCTCTTTGG GGGTAGATTG TGTGCAGGGT
GAGGCCGAAA TTATTTCGCC TTATGAAGTA AGGGTGAACG GCAAGGTGCT GGCGGCTAAA
AATATTATTG TGGCAACCGG CGCGGCGCCG AGCGTGCGGC CAATTGAAGG TTTGGACACC
ATTAATTACC TCACCACCGA TACTGTATGG AACTTAACTC AATTACCTAA CAGGTTAGTC
ATTGCCGGCG GCGGCCCTAT TGGCTGTGAA ATGGCGCAGG CGTTTGCGCG CCTTGGATCG
CAGGTAACGG TGGTGCAGCG CGGTGATCAA CTGTTGCCAA AAGAAGATGC CGATGTGGCT
GAGTTTGCAT TAAATACGCT GCGCAATGAA GGCGTGGAGG TTTTATTAAA CGCCGAGCTT
ACCGCCGTGG CCGCAGGCGA AGGTAAAAGT GTGTTAACGA TTAGCCAAAA CGAAAACACA
CAACACCTAG AATGCGACCA ATTACTGCTA GCCCTTGGGC GCACGCCGCG GCTGCAGGGT
TTTGGATTAG AAAATATTGG TGTGGCGATT TCCGAGCAAG GCAAGTTACT GGTGGATAGG
TTTCTGCGCA CATCCATTCC AACGGTATAT GCCTGTGGCG ATGTGATTGG CCCCTACCAA
TTTACCCATG CGGCCAGCCA TCAAGCGTGG TATGCCAGTG TGAACGCTTT GTTTGGCGGG
TTTAAATCGT TTAGCGTGGA TTACAGTGCG CTACCTTGGG TTACGTTTAC CGACCCAGAA
ATAGCGCGCG TTGGTGCCAG TGAGATGGAC CTGAAAAAGC GTGGTGTTCA CTACGAGGTA
ACGCGGTATT CACTCGTAGA GTTAGATCGT GCCATTGCAG AAGGCGAAGC GCACGGTTTT
GTAAAAGTGC TTACCGAAGA AGGCAAAGAT CGCATTTTAG GGGCGGTAAT AGTGGGCAGC
CACGGTGGCG AAATGATCAC CGAATTTGTG TCGGCTATAA AACACGGCAA AGGCTTAAAC
GCTATTTTAG GTACGGTACA CAGCTACCCA ACCTGGAGTG AGGCCAATAA AGCGGCAGCG
GGTAAATGGA AGCAGGCCCA CGCACCGCAG CGCTTATTAC AGTGGGTTGA AAAGTTTCAC
CGCTGGCAAC GTTAA
 
Protein sequence
MTPKKIGVLL VVALCVCAFF YFDLDRYIAV GLMRDWVAQS PVMASTIFAL LYFMVAALSL 
PGTGAMTLLA GAVFGLWWGF LLVSFASTIG ATVNMLVSRL LLRDWVTRRF RTSLERVNEG
VEREGSFYLF SIRLIPLVPF FVVNPVFGLT NMRATTFYWV SQVGMVPGTL LYVNAGVALG
ALDSISMGAI FTPQIIGSLV LLALFPWVAK AIVEAVKRKR TLAKYKKPKH FDANLIVIGA
GSGGLVAAYI AAAVKAKVIL VEKDLMGGDC LNTGCVPSKA LIKAAKVAHQ TRNAQHLGIN
AQPEIDFAKV MQHVKGAVKQ IEPHDSVERY TSLGVDCVQG EAEIISPYEV RVNGKVLAAK
NIIVATGAAP SVRPIEGLDT INYLTTDTVW NLTQLPNRLV IAGGGPIGCE MAQAFARLGS
QVTVVQRGDQ LLPKEDADVA EFALNTLRNE GVEVLLNAEL TAVAAGEGKS VLTISQNENT
QHLECDQLLL ALGRTPRLQG FGLENIGVAI SEQGKLLVDR FLRTSIPTVY ACGDVIGPYQ
FTHAASHQAW YASVNALFGG FKSFSVDYSA LPWVTFTDPE IARVGASEMD LKKRGVHYEV
TRYSLVELDR AIAEGEAHGF VKVLTEEGKD RILGAVIVGS HGGEMITEFV SAIKHGKGLN
AILGTVHSYP TWSEANKAAA GKWKQAHAPQ RLLQWVEKFH RWQR