| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3648 |
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| Symbol | |
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| ID | 3966605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4623691 |
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| End bp | 4624998 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922745 |
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| Product | formamidopyrimidine-DNA glycolase |
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| Protein accession | YP_529115 |
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| Protein GI | 90023288 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCGTA CCTTCAGGTC GCTGGCTTCC TTTCGCGTAC AGTTTTTAGC TTTGCTATTA
ACTGTGCTGG TGTTGTTAGG CTACGATTTT TTGCCCAAGC GCACCCTTGA GTTCGCACCG
TCGCCACGGT TCGAGCGTGT ACTTATGGCG GATAGCGATA TAGGCGGTAA CAGTGTCGCA
CGCTGGGTAA ATAAAAAGAC CGACCACCTA AGCTGCACCA TCGCCGAGGG CTATGCTTAC
CCATACTGTG GCGTACATTT CGCCTTCGAC CCCTACACTC ATACAGGTTT GGATCTAACT
CCCTACAACC ATTTGAAATT TCACGTGCAG TACCAAGGCG AGGCCAGCAC CCTACGCATT
TACGTACGCA ATCAGGATGC TAACGAACCC ACCAAAGATA TTGCTAAAGC CAAATATATT
TCGGTAAATA TTAAAACCCG CGAACTTGGT ACCCCCCAAA CAATTAAGCT AAGCGAGTTT
ATAGTTGCAG AGTGGTGGAA AGAGCAATTT GATGTACCCA GGGACAAAGC CCAACCGCAA
TTCGATAACG TAGTAAATAT AGGGATTGAA GTATTCGCCC CCACACCCCT CGGTGAGCAC
CAGTTAGCTG TAGAGCGCTT TGAATTTGTG GGCCCCTTAG TACCCCGTTA CGCGTGGTAC
TTAAGTATTT TAGGGTTTTG GTTAGCTGCC AGTTTTATTT ATTTAATTGC GCGCTTAATC
AAGCTTTACC GCCGCAACAA AATTTTTGCG CGGGTGGTGA CCGATTTAAG TAAAACCAAC
CAAGAGCTAG CCGACCAAAA AGAACATTTT CGCGTTTTAT CTACCAACGA TGCACTTACC
GGCATACGCA ATCGGCATGG CGTTAAGTTA AGTTACGATG CAATGCTGCA ATCGGCTAAC
CCCGACACAA AGATCTCGGT AATACTTATT GATATAGATC ACTTTAAACG TATTAACGAT
CGTCGAGGCC ACCAAATGGG TGATGAAGTA CTTTCCCAAT TCTCTGATTT ATTGCGCAGA
AATACTCGCG AAAACGATAT TGTCGGGCGC TGGGGAGGCG AAGAGTTTAT TGTGGTTAGC
GCACACACTA ACTTAAACCA AGCAGAGCTA CTCGCCGAAA AAATTCGCAC AACGGTTTCT
AACACAGCCC TAGGCGATAA CAAACCCATA ATGGTAACAA TTAGCTGCGG CGTAACCGAA
ATTCAACGAC CCGAATCGTT AGATGCCGCC TTAGCGCGCG CAGATAAATG CTTGTATAGC
GCCAAGCGTG GCGGCCGCAA TTGCACCGTT GCACAGTTTA ATGACTAA
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| Protein sequence | MTRTFRSLAS FRVQFLALLL TVLVLLGYDF LPKRTLEFAP SPRFERVLMA DSDIGGNSVA
RWVNKKTDHL SCTIAEGYAY PYCGVHFAFD PYTHTGLDLT PYNHLKFHVQ YQGEASTLRI
YVRNQDANEP TKDIAKAKYI SVNIKTRELG TPQTIKLSEF IVAEWWKEQF DVPRDKAQPQ
FDNVVNIGIE VFAPTPLGEH QLAVERFEFV GPLVPRYAWY LSILGFWLAA SFIYLIARLI
KLYRRNKIFA RVVTDLSKTN QELADQKEHF RVLSTNDALT GIRNRHGVKL SYDAMLQSAN
PDTKISVILI DIDHFKRIND RRGHQMGDEV LSQFSDLLRR NTRENDIVGR WGGEEFIVVS
AHTNLNQAEL LAEKIRTTVS NTALGDNKPI MVTISCGVTE IQRPESLDAA LARADKCLYS
AKRGGRNCTV AQFND
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