Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3640 |
Symbol | |
ID | 3966597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4617304 |
End bp | 4618338 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637922737 |
Product | twitching motility protein PilT |
Protein accession | YP_529107 |
Protein GI | 90023280 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATTA CTGAACTCCT CGCTTTCTCT GCCAAGCAGG GAGCATCGGA TTTACACCTT TCGGCGGGTT TGCCGCCCAT GATTCGTGTG GATGGCGATG TACGCCGCAT TAACTTGCCG CCGATGGAGC ACAAGCAAGT CCACGGGCTA ATTTACGACA TTATGAACGA CAAGCAGCGC AAGGATTTCG AAGAATTCCT CGAGACTGAC TTTTCGTTTG AAGTGCCCGG TGTGGCGCGC TTCCGTGTTA ACGCCTTTAA CCAAAACCGC GGCTCTGGTG CGGTGTTTCG TACCATTCCT TCCAAAGTGC TTACCATGGA AGAATTGGGT ATGGGGCAAG TGTTCCGCGA TGTATCTTCG GTGCCGCGCG GCTTGGTGTT GGTAACCGGG CCGACCGGTT CGGGTAAGTC CACCACCCTT GCGGCCATGA TCGATTATAT TAACGACAAC AAATACCACC ATATTCTTAC CATCGAAGAC CCGATCGAAT TCGTGCACGA AAGTAAGAAG TGCTTGGTAA ACCAGCGTGA GGTGCACCGC GATACCCACG GCTTTGCTGA AGCACTGCGC TCGGCACTGC GGGAAGACCC CGATATTATT CTGGTGGGTG AGCTGCGTGA CTTGGAAACC ATTCGCTTGG CACTAACCGC GGCGGAAACC GGTCACTTGG TGTTCGGCAC CTTGCACACC ACCTCGGCGG CCAAAACCAT TGACCGGGTA GTGGATGTAT TCCCCGCTAA CGAGAAAGCT ATGGTGCGTT CTATGTTGTC GGAATCCCTC GAAGCGGTTG TTTCGCAAAC ACTTTTGAAG AAAAACGGCG GTGGCCGTGT AGCAGCGCAC GAAATTATGC GCGGCACCTC AGCAATTCGT AACTTAATCC GCGAAGATAA GGTTGCGCAA ATGTATTCTG CTATTCAAAC CGGTAGTGCG GTGGGCATGC AAACAATGGA TCAGTGTTTG GCCGATCTTG TTGAGCGCCG CATAATTAGT CGCGATGTAG CGAAAGAAAA AGCAAAAATG CCCGATCAGT TCTAA
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Protein sequence | MDITELLAFS AKQGASDLHL SAGLPPMIRV DGDVRRINLP PMEHKQVHGL IYDIMNDKQR KDFEEFLETD FSFEVPGVAR FRVNAFNQNR GSGAVFRTIP SKVLTMEELG MGQVFRDVSS VPRGLVLVTG PTGSGKSTTL AAMIDYINDN KYHHILTIED PIEFVHESKK CLVNQREVHR DTHGFAEALR SALREDPDII LVGELRDLET IRLALTAAET GHLVFGTLHT TSAAKTIDRV VDVFPANEKA MVRSMLSESL EAVVSQTLLK KNGGGRVAAH EIMRGTSAIR NLIREDKVAQ MYSAIQTGSA VGMQTMDQCL ADLVERRIIS RDVAKEKAKM PDQF
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