Gene Sde_3605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3605 
Symbol 
ID3966562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4567796 
End bp4570174 
Gene Length2379 bp 
Protein Length792 aa 
Translation table11 
GC content54% 
IMG OID637922702 
Productglycosyl hydrolase family chitinase 
Protein accessionYP_529072 
Protein GI90023245 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3325] Chitinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000852085 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0070526 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCCTA TAGCTAAACT CACATTAGCC ACTGGCGCCA TGCTAAGTGC GCATGTGGCC 
TACGCTTACG ACTGCGATGG CCTTGCCACA TGGAACGCAT CGTCTGCCTA TGCCGGCTCT
ACCGTTGTGC AACACAGTAA CGTGGCTTAC AAAGCCAACT GGTGGACACA AAACCAAAAC
CCCGCTTCAC ATTCTGGCCC TTGGCAAGAG TGGACGAACC TAGGCAACTG CGATGGCGAC
GGTGGCGGCA ACACCAACCA AGCGCCCAGC GCAAATGCCA ACGGCCCCTA CGCCGCGCAA
CTTGGCGCCG CCATAGCGTT TAGCTCTGCA GGCTCTAGCG ATAGCGACGG CAATATTGCC
AGCTACAACT GGACCTTTGG CGACGGTAAC AGCAGCAACC AAGCTAGCCC AAGCCACACC
TATGGCAGCC AAGGCACCTA CGCGGTTACC TTAACCGTTA CCGATAACGA AGGCGCAAGC
AGCAGTGCCA CCACAAGCGC AAGCGTTACC CAAGGCGGAG ACCCTGGCGA TTGCCAAGCA
CCGCAATACA GTGCGGGCAC CCAATACGCT GCGGGCGATA TCGTTGCCAA TGGCGGCAAC
CTGTACCAGT GTAATATTGC GGGCTGGTGC TCTTCATCTG CCGCATGGGC CTATGCCCCA
GGTACTGGCG CACACTGGCA AGATGCGTGG TCACTTACGA GCGAATGCGA CGACAACGGC
AACACCAACC AAGCACCTAC AGCCAATGCT AACGGCCCAT ATTCTGGTAG CGCTGGTATA
AGCATTAGTT TTAGCAGCAA TGGCTCTGCC GACAGCGACG GCACAATTGC CAGTTACAGT
TGGAACTTTG GCGACGGCGC AAGCAGCAGC CAAGCAAACC CAAGCCACAG CTACATGAAT
GAAGGCACTT ACCAAGTTAG CCTAACCGTA ACCGATGACG ACGGCGCGAG CGCCACCGCA
TTCACCACCG CTAACGTAAC TGGTAATGGC GAAAACCAAG AGCCTGTTGC AAGCATTAGT
GCACCATCCA GCGCTAGCGA AGGCGCTAGT GTGAACTTTT CCAGCGCGGG CAGTAACGAC
CCAGACGGCA GCATAGTTAG CTACAGCTGG AACTTTGGCG ATGGCACTAG CAGTCAACAA
GCTAACCCCA GCCACACCTA CAGCAGCGCA GGTAGCTATA GCGTTAGCCT AACGGTTGTT
GATAACGAAG GCGCGAATAA CGTCGCCAAC CACAGCATTA CAATCAGTGG CGATACCGGC
GGCGGTACAC ACGGCGATAA AATTATTGGC TACTTCGCAG AGTGGGGCGT ATACGGCCGC
AATTATCACG TTAAAAACAT TCACACCAGC GGCTCTGCCG ACAAACTCAC TCACATCGTT
TACGCGTTTG GCAACGTTCA AAACGGCGAG TGTAAAATTG GCGATTCCTA CGCAGCATAC
GACAAAGCCT ACAGCGCAGC AGACAGTGTA GATGGCGTTG CCGATACTTG GGACGACGGT
GTACTGCGCG GTAACTTCGG TCAACTACGC CGCTTAAAAG CCATGCACCC ACAAATTAAA
ATAGTGTGGT CTTTCGGTGG CTGGACATGG TCTGGCGGTT TTGGCGAAGC AGCAGCGAAT
GCCGATCACT TTGCCAACTC CTGTTACGAC TTAGTATTCG ACGCACGCTG GGCAGACGTT
TTCGACGGCA TCGACATCGA CTGGGAATAC CCCAACGACT GCGGCCTAAG CTGTGATAAT
AGCGGCTACG ATGGCTACCG CGTACTCATG CAAGCATTGC GCAATCGTTT TGGCAACAAA
CTAGTAACCG CTGCCATTGG CGCTGGCGAA TCTAAACAAA ATGCAGCCGA CTACGGTGGC
GCAGCACAGT ACTTAGATTT TTACATGCTA ATGACCTACG ACTTCTTCGG CGCATTTAAC
CCACAAGGGC CAACCGCACC GCACTCACCG CTATACAACT ACCCAGGCAT GCCAATAGAA
GGATTCTCTT CTGACCACGG TATCCAAGTA CTTAAAAGCA AAGGTGTACC TGCCGAGAAA
ATCTTACTGG GCATAGGCTT TTACGGCCGC GGCTGGACCA ACGTAACGCA AGATGCCCCA
GGCGGCAGCG CTAACGGCGC AGCACCTGGC ACCTACGAAA AAGGCATTGA AGATTACAAA
GTGTTGAAAA ACACCTGCCC AGCCACCGGC ACAATTGCCG GCACCGCTTA CGCCAAATGC
GGAAGCAACT GGTGGGGCTA CGACACACCA GCCACCATCG ATAGCAAAAT GGACTACGCC
AAACAACAAG GCCTAGGCGG CGCGTTCTTC TGGGAGCTAA GTGGCGACAC CACCGATGGC
GAACTGATTA GAGCGATTGA TAATGGCTTA AAAAACTAA
 
Protein sequence
MNPIAKLTLA TGAMLSAHVA YAYDCDGLAT WNASSAYAGS TVVQHSNVAY KANWWTQNQN 
PASHSGPWQE WTNLGNCDGD GGGNTNQAPS ANANGPYAAQ LGAAIAFSSA GSSDSDGNIA
SYNWTFGDGN SSNQASPSHT YGSQGTYAVT LTVTDNEGAS SSATTSASVT QGGDPGDCQA
PQYSAGTQYA AGDIVANGGN LYQCNIAGWC SSSAAWAYAP GTGAHWQDAW SLTSECDDNG
NTNQAPTANA NGPYSGSAGI SISFSSNGSA DSDGTIASYS WNFGDGASSS QANPSHSYMN
EGTYQVSLTV TDDDGASATA FTTANVTGNG ENQEPVASIS APSSASEGAS VNFSSAGSND
PDGSIVSYSW NFGDGTSSQQ ANPSHTYSSA GSYSVSLTVV DNEGANNVAN HSITISGDTG
GGTHGDKIIG YFAEWGVYGR NYHVKNIHTS GSADKLTHIV YAFGNVQNGE CKIGDSYAAY
DKAYSAADSV DGVADTWDDG VLRGNFGQLR RLKAMHPQIK IVWSFGGWTW SGGFGEAAAN
ADHFANSCYD LVFDARWADV FDGIDIDWEY PNDCGLSCDN SGYDGYRVLM QALRNRFGNK
LVTAAIGAGE SKQNAADYGG AAQYLDFYML MTYDFFGAFN PQGPTAPHSP LYNYPGMPIE
GFSSDHGIQV LKSKGVPAEK ILLGIGFYGR GWTNVTQDAP GGSANGAAPG TYEKGIEDYK
VLKNTCPATG TIAGTAYAKC GSNWWGYDTP ATIDSKMDYA KQQGLGGAFF WELSGDTTDG
ELIRAIDNGL KN