| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3579 |
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| Symbol | |
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| ID | 3966441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4537735 |
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| End bp | 4539246 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922676 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_529046 |
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| Protein GI | 90023219 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.666057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTGATG TTAACGAAGC AAACGAAATA GTCGAGGTTA CAGAGCAAGA CGAAGTGGTG
ATTAGCCGCA CGCGCTTGCC GTTCTCGTTT GCGTCTGAGC ACGGTGTGGT AATAGAAGAC
GGTTGTATAT TGCACCGCTC CGATATTTCT GCGCCCATCC TGCTTGAGTT GCGCCGCCAT
ATGGGGCGCC CACTTATTTT AAAGCAAGTG GATGAAGCCG AATTCAAATC GAAGCTCACC
AAGTTGTATC AAAGTAACGA CGGCGAAGCG CAACAAGCTG TTGACGAAAT GGGTGCAGAG
TTTGACCTTA CCCAGCTCGC AGATGATATT TCTGACGATA GTGAATTGTT ATCGGGCGAC
GGTGATGCGC CGGTTATTCG CTTAATTAAC GCGGTGTTGT CGCAAGCGGT ACAAGAGCAG
GCGTCGGATA TTCACGTCGA GCCCTATGAA GATCGCGTCT CTATTCGCTT CCGCGTGGAT
GGTATTCTTA ACGAAGTACT TTCCCCTAAG CCTGTGCTTG CCCCGGTATT GGTATCGCGC
TTAAAAGTTA TGGCGCGCTT GGATATTGCC GAAAAACGTA TTCCGCAGGA TGGTCGCATT
ACCGTTAAGT TAGCCGGTCA CGCTGTGGAT ATTCGTGTTT CGACTATTCC ATCTGCCCAC
GGTGAGCGCG TGGTATTGCG TCTGCTCGAC CAAGCCGCAG GCCAATTGGG CTTACCGCAA
TTGCGTATGC CTGAAGATGT ACAAACCAAT TTCGAAAAAG CACTGCGCAA ACCGCACGGT
ATTATTTTGG TTACCGGCCC TACGGGTTCG GGTAAAACCA CATCGCTTTA TGCGGGCCTA
AGTTATTTGA ATACGCGCTC GCGCAATATT CTTACTATTG AAGACCCAAT CGAGTATTTG
TTGGCAGGTA TTGGCCAAAC ACAAGTAAAT ACCAAAGTAG ATATGACCTT CGCACGCGGG
CTGCGGGCAA TACTTCGTCA GGATCCCGAT GTAGTCATGA TCGGTGAGAT TCGCGACCAA
GAAACCGCGC AAATTGCTGT ACAGGCGAGT TTGACCGGTC ACTTGGTGTT ATCTACCTTG
CACACCAACA CCGCAATAGG TGCGGTAATG CGTTTGCAAG ATATGGGCGT AGAGCCCTTT
TTGTTGTCAT CCAGTTTAGA AGGCTTGATG GCGCAGCGTT TGGTGCGTTT GTTGTGCTCT
AGCTGTAAAG AGCCGCACGA GGCCAGTGCA TCGGAATCTC AGCGCTTGGG CGTGCCCGAG
GGCAGTATTG TGTATCGCGC TGTTGGTTGT GATAAGTGCC ATCAAACGGG TTACCGAGGC
CGAACCGGTA TTTACGAATT AATTCCAGTA GACGACACAT TGCGTCAACT TATTCACGAA
GAAGTGGGTG AGCAGGCTAT GTTAGCCCAT GCGCGTAAAA CCGTGCGCTC TATCGATCAA
GACGGTCGAG AAAAAGTGCT GCAGGGTATG ACCAGTGTGG AAGAAGTACT GCGCGTTACC
GCGCTATCTT AA
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| Protein sequence | MIDVNEANEI VEVTEQDEVV ISRTRLPFSF ASEHGVVIED GCILHRSDIS APILLELRRH
MGRPLILKQV DEAEFKSKLT KLYQSNDGEA QQAVDEMGAE FDLTQLADDI SDDSELLSGD
GDAPVIRLIN AVLSQAVQEQ ASDIHVEPYE DRVSIRFRVD GILNEVLSPK PVLAPVLVSR
LKVMARLDIA EKRIPQDGRI TVKLAGHAVD IRVSTIPSAH GERVVLRLLD QAAGQLGLPQ
LRMPEDVQTN FEKALRKPHG IILVTGPTGS GKTTSLYAGL SYLNTRSRNI LTIEDPIEYL
LAGIGQTQVN TKVDMTFARG LRAILRQDPD VVMIGEIRDQ ETAQIAVQAS LTGHLVLSTL
HTNTAIGAVM RLQDMGVEPF LLSSSLEGLM AQRLVRLLCS SCKEPHEASA SESQRLGVPE
GSIVYRAVGC DKCHQTGYRG RTGIYELIPV DDTLRQLIHE EVGEQAMLAH ARKTVRSIDQ
DGREKVLQGM TSVEEVLRVT ALS
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