Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3447 |
Symbol | |
ID | 3966251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4386669 |
End bp | 4389914 |
Gene Length | 3246 bp |
Protein Length | 1081 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637922544 |
Product | pectin methylesterase-like |
Protein accession | YP_528914 |
Protein GI | 90023087 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4677] Pectin methylesterase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000110016 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000230846 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAAAAC GAACTCTATC TGCGTTGTTA GCCCTGTGCG CAACATTAAC GGCTTGCGGT GGTGGCGATA TAACCAGCGG CGGCGATGCT ATACCGGCAG TAAACCAACC CGCCCCAGTA CAAGAGCCTG AACCTGAACC TGAACCACAA CCGGAACCCG AACCCGAACC CGAGCCCGAG CCAGAACCAG AGGGCGCGTG GACCTGCCCA GAAACAGGCT TCTACTTCTG TGACGACTTT GAAGACGGCA CGTTTGATGA CAAGTGGGAC GATCTCATTG CCACATACGA CCTACCAAGC CCTGGTGTAT TCGACATATT AGACGAAGCA AGCGGCAAAT CTTTGCGCTT TACAGCAGGC ACCCGTGGCG GTGACTTAGC AGATGGCGAA CTTATTGTTG TAAAAGATAC AGCATTCGAA AATGTAACCA ACGCAGATTA CTCCTTAGAG TACCGTATTC GCCCGCGCAA CAACGGCAAC ACAGGCAACA AGTACCTGCA CGCTATGTCG CGCTACGAAG GCCCTAAAGA ATATTACTTT GGCGGTTTAA GCATGCAAGG CTCTACTGCA AGTACGCAAG TAGAAGCAGG TTTCGTATTG CCAGAAAACA CCACTAGCAT TAGCAACCGC TTGGTGCAGG CCAAGTACCC GTTAGAGCTA GGTACAACAG GCATGAGCGA CGGCTACTGG TACGAAGTAC GCTTCGATAT GATAGGCAAT ACAGGCACCA TTTACCTAGA TGGCGAACCA CAAGGCAGCT TTACCGATGC CGATGGCCTT TACCCATTAA CAGGTAAAAT TGGCTTTATG ACTTACAACC GCTCATTCGA AATTGATTGG GTGCGAGTAG GCGACCCAGC TATTAAGCCT GTACAACTTT CACTGGATTA CGCCAGCCCG CTATGGGAAG CAGCGGCAGA CCAAGACCCG CTAAACGTAA CAGTTACTGC CATACAAAGC GATGGCGTAA CAGCAGATAC CTTTACCGCA GTTAGCAGCG ATACCAATGT AGTAACCACA AGTATTGCAA ATAACGTAGT AACCATTACC CCTGTAGCTC AAGGTAGTGC CACCGTGACC TTTACCGCTG GTTCAGATGC TAATCGCGTT AAAACAATTG ATGTAGAAAT TGCACGCGCG TTTGTTATGT CTACTACCGA CTACGGCGAT ATAGCTTCTA AGGTAACACC AACTGTTGGT ATGACTGACG CCAACCCAGA CGCACATTTA AGCATTACAT TCGATAGCGC ACCTACCCTA AGCGGTGTTG GCTCTATACG TATATACAAT GCAGCAGACG ATAGCGAAGT AGATGTTATT CGCCTTACCG ACGAAAGTGA TGCATTGGGT TACGCCGGCC AAGCCAACAA GCGTGAATTA AATACCACAC CGGTTTACTT GGATGGCAAC ACCCTACACG TTAGCCCACA CAGTAACGCA CTTGCCTACG GCCAAGACTA CTACGTTGCC ATTGGCGATA ACGTACTTAC CGGCGCAACA CTAAACACCA TTGCGTTTGA TGGTTTAGGT AAAAACGCGG GTTGGACTTT CTCTACCAAA GCCTCTGCCC CTACCGGCAA CACCGTAACT GTAGACGACG ATGCAAGTGC AGATTTCAGC ACAGTACAAG GTGCGTTGAA CTATGCTATG GCAAATACCA CGGACGATTC AATCACCATT AACATTGCTA ACGGCAACTA CTACGAGCCG CTATATCTAG CAGAGCGCAA CAACGTAACG CTAAAAGGTG AAAGCCGCGA CGGCGTTGTT ATTCATTACA ACAACCACGA AGCCATGAAC GGTGGCAGCA CTGGCCGCGC AAACTTCTAT GTTGCCAACT CAGACATGCT AACCCTAGAA ACGCTAACCC TTAAAAACGG TCATCAGCGC ACTGGTGGTG GCGACCAAGC AGAAACTATC TACTTCAATA GCAGCAGCAA TACCGATCGC TTAATTGCCA AAGGCGCTGC TTTTATTAGT GAACAAGATA CGCTGTTACT TAAAGGCTAC AACTGGTTCT ACAACTCGCT TGTGGTAGGT AACGTAGACT TTATTTGGGG CTACAGCGCA GTAACCTTGT TTGAAGAAAC AGAAATTCGA TCTATTGCCG ACTCTAAACC AGGTGCGGGC GACTCGGGTG GCTATATTCT GCAAGCGCGT ACGCCACTAG AAACAGACCT TGGCTTTGTT TTCTTAAATA GCGAATTAAC AAAAGCTACC GGCGTAAACG GTAACGAAAT TGGCGATGGC AAAACCTACC TTGCGCGCAG CGGCGGCAGC ACGGGTTACT TCGATAATAT TTCGTTTATT AACACCAAAA TGGGTAGCCA TATTGCCGAC ATAGGCTTCG CCTACGCCGA CATTAACGGT CAACCTGCCC CTAACCCAGC GGTAGCTACT GCTGACGCAG GCTGGCGTGA ATTTGGCAGC ATGGATTCTG CAGGCACGGC TCTAGATGTA TCTGCACGCT GCGGTGATAG CGGCAGCTGT ATCCAACTTA CGCAAGCACA AGTAGATGCG CAGTACTGTA ACCGCGCGCA AATTTTTGCT AGCTGGAACG ATTGGACAGG CTGGGACCCG TTGCCAGAAG ATACCTCTGA CGATGCCTGT GCTGACCCCG TTATACCTGG TGCAGTAACG TGGACTGGCA TTGCAATGAG CCTTGGGGGT TCTACAACAT CTGTTTCCGG CAACATTACC GAGCAAACAG ACAGCAATAT TACATTCACT GCAGACGGCG GTAAGTTTGA ATCGAGCAAA CTTTCAACTT ACTTCGCTTA TCAAGAATTG ACTGGCGACT TTGTAATTAG CGCCAAAGCT AAAACCATTG GCTTACTGCG CGAAAACGGC AGCTACCAGT TCCCTACAGG CATATTGATG TGTGTTTGCG ATGCGGCAGC GGCAACAACT GGCTTAATGG GCCACGCCAG CCTCAATGAC ATTACAGTTG ATACTACTGT GAATTTAGTT GCCACCTACG GCCACATTCA AACCACAGCT GGTAGCTGGA ATAAAACTGG AACGACTGAC GTAACCGCTG GCGACAACCT GTATATACAG CTAGAGCGCG CAGGTAATAG TTATACCGCA CGCTACTCGA CTGATGGCGG TGCCACCTAT AGCAACATTG GTGGCAGCTC ATTTACAGAC ACCCTTCCAG ACACACTTAA AGTGGGTTTC TTCGCTACGC CTAACAACAC CGGTGAGCAA ACTTTCGTTT ACGAAGATAT ACAAATCACT CAGTAA
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Protein sequence | MTKRTLSALL ALCATLTACG GGDITSGGDA IPAVNQPAPV QEPEPEPEPQ PEPEPEPEPE PEPEGAWTCP ETGFYFCDDF EDGTFDDKWD DLIATYDLPS PGVFDILDEA SGKSLRFTAG TRGGDLADGE LIVVKDTAFE NVTNADYSLE YRIRPRNNGN TGNKYLHAMS RYEGPKEYYF GGLSMQGSTA STQVEAGFVL PENTTSISNR LVQAKYPLEL GTTGMSDGYW YEVRFDMIGN TGTIYLDGEP QGSFTDADGL YPLTGKIGFM TYNRSFEIDW VRVGDPAIKP VQLSLDYASP LWEAAADQDP LNVTVTAIQS DGVTADTFTA VSSDTNVVTT SIANNVVTIT PVAQGSATVT FTAGSDANRV KTIDVEIARA FVMSTTDYGD IASKVTPTVG MTDANPDAHL SITFDSAPTL SGVGSIRIYN AADDSEVDVI RLTDESDALG YAGQANKREL NTTPVYLDGN TLHVSPHSNA LAYGQDYYVA IGDNVLTGAT LNTIAFDGLG KNAGWTFSTK ASAPTGNTVT VDDDASADFS TVQGALNYAM ANTTDDSITI NIANGNYYEP LYLAERNNVT LKGESRDGVV IHYNNHEAMN GGSTGRANFY VANSDMLTLE TLTLKNGHQR TGGGDQAETI YFNSSSNTDR LIAKGAAFIS EQDTLLLKGY NWFYNSLVVG NVDFIWGYSA VTLFEETEIR SIADSKPGAG DSGGYILQAR TPLETDLGFV FLNSELTKAT GVNGNEIGDG KTYLARSGGS TGYFDNISFI NTKMGSHIAD IGFAYADING QPAPNPAVAT ADAGWREFGS MDSAGTALDV SARCGDSGSC IQLTQAQVDA QYCNRAQIFA SWNDWTGWDP LPEDTSDDAC ADPVIPGAVT WTGIAMSLGG STTSVSGNIT EQTDSNITFT ADGGKFESSK LSTYFAYQEL TGDFVISAKA KTIGLLRENG SYQFPTGILM CVCDAAAATT GLMGHASLND ITVDTTVNLV ATYGHIQTTA GSWNKTGTTD VTAGDNLYIQ LERAGNSYTA RYSTDGGATY SNIGGSSFTD TLPDTLKVGF FATPNNTGEQ TFVYEDIQIT Q
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