Gene Sde_3447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3447 
Symbol 
ID3966251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4386669 
End bp4389914 
Gene Length3246 bp 
Protein Length1081 aa 
Translation table11 
GC content49% 
IMG OID637922544 
Productpectin methylesterase-like 
Protein accessionYP_528914 
Protein GI90023087 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4677] Pectin methylesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000110016 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000230846 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAAAAC GAACTCTATC TGCGTTGTTA GCCCTGTGCG CAACATTAAC GGCTTGCGGT 
GGTGGCGATA TAACCAGCGG CGGCGATGCT ATACCGGCAG TAAACCAACC CGCCCCAGTA
CAAGAGCCTG AACCTGAACC TGAACCACAA CCGGAACCCG AACCCGAACC CGAGCCCGAG
CCAGAACCAG AGGGCGCGTG GACCTGCCCA GAAACAGGCT TCTACTTCTG TGACGACTTT
GAAGACGGCA CGTTTGATGA CAAGTGGGAC GATCTCATTG CCACATACGA CCTACCAAGC
CCTGGTGTAT TCGACATATT AGACGAAGCA AGCGGCAAAT CTTTGCGCTT TACAGCAGGC
ACCCGTGGCG GTGACTTAGC AGATGGCGAA CTTATTGTTG TAAAAGATAC AGCATTCGAA
AATGTAACCA ACGCAGATTA CTCCTTAGAG TACCGTATTC GCCCGCGCAA CAACGGCAAC
ACAGGCAACA AGTACCTGCA CGCTATGTCG CGCTACGAAG GCCCTAAAGA ATATTACTTT
GGCGGTTTAA GCATGCAAGG CTCTACTGCA AGTACGCAAG TAGAAGCAGG TTTCGTATTG
CCAGAAAACA CCACTAGCAT TAGCAACCGC TTGGTGCAGG CCAAGTACCC GTTAGAGCTA
GGTACAACAG GCATGAGCGA CGGCTACTGG TACGAAGTAC GCTTCGATAT GATAGGCAAT
ACAGGCACCA TTTACCTAGA TGGCGAACCA CAAGGCAGCT TTACCGATGC CGATGGCCTT
TACCCATTAA CAGGTAAAAT TGGCTTTATG ACTTACAACC GCTCATTCGA AATTGATTGG
GTGCGAGTAG GCGACCCAGC TATTAAGCCT GTACAACTTT CACTGGATTA CGCCAGCCCG
CTATGGGAAG CAGCGGCAGA CCAAGACCCG CTAAACGTAA CAGTTACTGC CATACAAAGC
GATGGCGTAA CAGCAGATAC CTTTACCGCA GTTAGCAGCG ATACCAATGT AGTAACCACA
AGTATTGCAA ATAACGTAGT AACCATTACC CCTGTAGCTC AAGGTAGTGC CACCGTGACC
TTTACCGCTG GTTCAGATGC TAATCGCGTT AAAACAATTG ATGTAGAAAT TGCACGCGCG
TTTGTTATGT CTACTACCGA CTACGGCGAT ATAGCTTCTA AGGTAACACC AACTGTTGGT
ATGACTGACG CCAACCCAGA CGCACATTTA AGCATTACAT TCGATAGCGC ACCTACCCTA
AGCGGTGTTG GCTCTATACG TATATACAAT GCAGCAGACG ATAGCGAAGT AGATGTTATT
CGCCTTACCG ACGAAAGTGA TGCATTGGGT TACGCCGGCC AAGCCAACAA GCGTGAATTA
AATACCACAC CGGTTTACTT GGATGGCAAC ACCCTACACG TTAGCCCACA CAGTAACGCA
CTTGCCTACG GCCAAGACTA CTACGTTGCC ATTGGCGATA ACGTACTTAC CGGCGCAACA
CTAAACACCA TTGCGTTTGA TGGTTTAGGT AAAAACGCGG GTTGGACTTT CTCTACCAAA
GCCTCTGCCC CTACCGGCAA CACCGTAACT GTAGACGACG ATGCAAGTGC AGATTTCAGC
ACAGTACAAG GTGCGTTGAA CTATGCTATG GCAAATACCA CGGACGATTC AATCACCATT
AACATTGCTA ACGGCAACTA CTACGAGCCG CTATATCTAG CAGAGCGCAA CAACGTAACG
CTAAAAGGTG AAAGCCGCGA CGGCGTTGTT ATTCATTACA ACAACCACGA AGCCATGAAC
GGTGGCAGCA CTGGCCGCGC AAACTTCTAT GTTGCCAACT CAGACATGCT AACCCTAGAA
ACGCTAACCC TTAAAAACGG TCATCAGCGC ACTGGTGGTG GCGACCAAGC AGAAACTATC
TACTTCAATA GCAGCAGCAA TACCGATCGC TTAATTGCCA AAGGCGCTGC TTTTATTAGT
GAACAAGATA CGCTGTTACT TAAAGGCTAC AACTGGTTCT ACAACTCGCT TGTGGTAGGT
AACGTAGACT TTATTTGGGG CTACAGCGCA GTAACCTTGT TTGAAGAAAC AGAAATTCGA
TCTATTGCCG ACTCTAAACC AGGTGCGGGC GACTCGGGTG GCTATATTCT GCAAGCGCGT
ACGCCACTAG AAACAGACCT TGGCTTTGTT TTCTTAAATA GCGAATTAAC AAAAGCTACC
GGCGTAAACG GTAACGAAAT TGGCGATGGC AAAACCTACC TTGCGCGCAG CGGCGGCAGC
ACGGGTTACT TCGATAATAT TTCGTTTATT AACACCAAAA TGGGTAGCCA TATTGCCGAC
ATAGGCTTCG CCTACGCCGA CATTAACGGT CAACCTGCCC CTAACCCAGC GGTAGCTACT
GCTGACGCAG GCTGGCGTGA ATTTGGCAGC ATGGATTCTG CAGGCACGGC TCTAGATGTA
TCTGCACGCT GCGGTGATAG CGGCAGCTGT ATCCAACTTA CGCAAGCACA AGTAGATGCG
CAGTACTGTA ACCGCGCGCA AATTTTTGCT AGCTGGAACG ATTGGACAGG CTGGGACCCG
TTGCCAGAAG ATACCTCTGA CGATGCCTGT GCTGACCCCG TTATACCTGG TGCAGTAACG
TGGACTGGCA TTGCAATGAG CCTTGGGGGT TCTACAACAT CTGTTTCCGG CAACATTACC
GAGCAAACAG ACAGCAATAT TACATTCACT GCAGACGGCG GTAAGTTTGA ATCGAGCAAA
CTTTCAACTT ACTTCGCTTA TCAAGAATTG ACTGGCGACT TTGTAATTAG CGCCAAAGCT
AAAACCATTG GCTTACTGCG CGAAAACGGC AGCTACCAGT TCCCTACAGG CATATTGATG
TGTGTTTGCG ATGCGGCAGC GGCAACAACT GGCTTAATGG GCCACGCCAG CCTCAATGAC
ATTACAGTTG ATACTACTGT GAATTTAGTT GCCACCTACG GCCACATTCA AACCACAGCT
GGTAGCTGGA ATAAAACTGG AACGACTGAC GTAACCGCTG GCGACAACCT GTATATACAG
CTAGAGCGCG CAGGTAATAG TTATACCGCA CGCTACTCGA CTGATGGCGG TGCCACCTAT
AGCAACATTG GTGGCAGCTC ATTTACAGAC ACCCTTCCAG ACACACTTAA AGTGGGTTTC
TTCGCTACGC CTAACAACAC CGGTGAGCAA ACTTTCGTTT ACGAAGATAT ACAAATCACT
CAGTAA
 
Protein sequence
MTKRTLSALL ALCATLTACG GGDITSGGDA IPAVNQPAPV QEPEPEPEPQ PEPEPEPEPE 
PEPEGAWTCP ETGFYFCDDF EDGTFDDKWD DLIATYDLPS PGVFDILDEA SGKSLRFTAG
TRGGDLADGE LIVVKDTAFE NVTNADYSLE YRIRPRNNGN TGNKYLHAMS RYEGPKEYYF
GGLSMQGSTA STQVEAGFVL PENTTSISNR LVQAKYPLEL GTTGMSDGYW YEVRFDMIGN
TGTIYLDGEP QGSFTDADGL YPLTGKIGFM TYNRSFEIDW VRVGDPAIKP VQLSLDYASP
LWEAAADQDP LNVTVTAIQS DGVTADTFTA VSSDTNVVTT SIANNVVTIT PVAQGSATVT
FTAGSDANRV KTIDVEIARA FVMSTTDYGD IASKVTPTVG MTDANPDAHL SITFDSAPTL
SGVGSIRIYN AADDSEVDVI RLTDESDALG YAGQANKREL NTTPVYLDGN TLHVSPHSNA
LAYGQDYYVA IGDNVLTGAT LNTIAFDGLG KNAGWTFSTK ASAPTGNTVT VDDDASADFS
TVQGALNYAM ANTTDDSITI NIANGNYYEP LYLAERNNVT LKGESRDGVV IHYNNHEAMN
GGSTGRANFY VANSDMLTLE TLTLKNGHQR TGGGDQAETI YFNSSSNTDR LIAKGAAFIS
EQDTLLLKGY NWFYNSLVVG NVDFIWGYSA VTLFEETEIR SIADSKPGAG DSGGYILQAR
TPLETDLGFV FLNSELTKAT GVNGNEIGDG KTYLARSGGS TGYFDNISFI NTKMGSHIAD
IGFAYADING QPAPNPAVAT ADAGWREFGS MDSAGTALDV SARCGDSGSC IQLTQAQVDA
QYCNRAQIFA SWNDWTGWDP LPEDTSDDAC ADPVIPGAVT WTGIAMSLGG STTSVSGNIT
EQTDSNITFT ADGGKFESSK LSTYFAYQEL TGDFVISAKA KTIGLLRENG SYQFPTGILM
CVCDAAAATT GLMGHASLND ITVDTTVNLV ATYGHIQTTA GSWNKTGTTD VTAGDNLYIQ
LERAGNSYTA RYSTDGGATY SNIGGSSFTD TLPDTLKVGF FATPNNTGEQ TFVYEDIQIT
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