Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3445 |
Symbol | |
ID | 3966249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4383161 |
End bp | 4383841 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637922542 |
Product | ABC transporter, ATP-binding protein |
Protein accession | YP_528912 |
Protein GI | 90023085 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4181] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 0.937681 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000228782 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTAGCA CCCACAACCT TTGCCACCAA GTACCTATTC ACGAAAGCGA GCTCGCTTTA CTAAAAAGCA TCGATTTGAA TATTTTAAAA GGTGAATCTG TTGCCATTGT GGGCGCATCT GGCTCGGGTA AATCCACTCT GCTTACCATG CTTGCAGGGT TAGATACGCC AACATCGGGC AATATTGTTA TCGATTCGCA AGATATTACT CAATTAGACG AAGAACAGCG GGCAAAAGTT CGCGCAGATT ACATTTCTTT TGTTTTTCAA AACTTTCAAT TATTAGGCAG TTTAACCGCA CTAGAGAACG TAATGCTGCC ATTGGAAGTG CGCGGTAACG CAGACCCTTT AACCAAAGCC AGCCAGTATT TACAGCGGGT GGGCCTAGGT AAGCGCTTAA CCCACTACCC TAAGCAGCTA TCTGGCGGTG AACAACAACG CGTAGCGCTA GCACGTGCTT TTGCTTGCGA GGCACCATTA TTGTTTGCCG ATGAACCCAC TGGTAATTTA GATTCGGCCA CAGGCCGCGC CATTGCCGAT TTATTATTCG AACTAAACGG TGAAAGCAAT ACTACATTAA TATTGGTTAC TCACGACGAC AAACTCGCGC AGCGCTGCCA GCGCCAATTG CGCATGGAAG AAGGTCGCAT TAGCGAAATT ACCACAGCCC ATTTCGCTTA G
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Protein sequence | MISTHNLCHQ VPIHESELAL LKSIDLNILK GESVAIVGAS GSGKSTLLTM LAGLDTPTSG NIVIDSQDIT QLDEEQRAKV RADYISFVFQ NFQLLGSLTA LENVMLPLEV RGNADPLTKA SQYLQRVGLG KRLTHYPKQL SGGEQQRVAL ARAFACEAPL LFADEPTGNL DSATGRAIAD LLFELNGESN TTLILVTHDD KLAQRCQRQL RMEEGRISEI TTAHFA
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