Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3395 |
Symbol | |
ID | 3966121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4327130 |
End bp | 4328017 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922492 |
Product | vibriobactin utilization protein ViuB |
Protein accession | YP_528862 |
Protein GI | 90023035 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2375] Siderophore-interacting protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.472238 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAGTCTA ATTCGAGGCT AATACCCCCA AAAAAGCCAA GACGATTGCC ACCAATAATG CTAACACTAG TAAACAGAGT TCAACTTTCT GAGGCATTGG TGCGTTTAAC CTTTACGGGG GATGATTTAA CGCGTTTTAA AGGCGTACAT AAAGGCGCAC ACATTAAATT ATTTTTCGCG CTAGCCCATC AAACTAAACC GGTGCTGCCC ACGCTAGGCG TTAATGGCCC AGAGTGGCCA CCGCAAAACG AAAAGCCCAT TGTGCGTACC TACAGTTTGC GCGCGTATCG CGAAGAAAAA AATGAAATCG ATATTGAATT TGTTGTGCAT GGTGAGGGCT GTGAAGCGAG CGCACATAGT GTGGCCTCTT TCTGGGCGCA AACAGCAAAA ATAGGTGCAC ATATAGGCCT CGCTGGGCCG GGTGGCCCAG TCCCGTTAAT ACAAGCTGCA CCTTGGCATA TATTGGCTGG TGACTTAACG GCGCTGCCCG CCATAGCCGG TATTTTAGAA GAGCTGCCCG TTACGGCTAA AGGGTTAGCT TTTATAGAGG TACCGAATTC AAACTTTGAA ATAGAACTTA AGTCGCTGCC TAATATGTTT ATAAATTGGG TGCACTCAGA GCATCAAGTT AATGGCGAGG GTGGCGGCTT ACCCTTGGTT AGTGCGGTTG AAAAGGTATT AAAAGGTGCA GCGCTTTGGT TTGGCTCGGC GGCGCCTTCG GCTTTTATTG CTGGCGAAAA TGCTAGCACC GTAGCGTTGC GAGATGTATT GCGAGAGCGG CTTGGGCTAA CCAAAAAAAA TTGTTATGCC GTACCCTATT GGCGAAGAGG GCAGAACGAA GAAGCATACC ATCAACAGCG TCATGCAATT ATGGATCAGG TGTACTAG
|
Protein sequence | MESNSRLIPP KKPRRLPPIM LTLVNRVQLS EALVRLTFTG DDLTRFKGVH KGAHIKLFFA LAHQTKPVLP TLGVNGPEWP PQNEKPIVRT YSLRAYREEK NEIDIEFVVH GEGCEASAHS VASFWAQTAK IGAHIGLAGP GGPVPLIQAA PWHILAGDLT ALPAIAGILE ELPVTAKGLA FIEVPNSNFE IELKSLPNMF INWVHSEHQV NGEGGGLPLV SAVEKVLKGA ALWFGSAAPS AFIAGENAST VALRDVLRER LGLTKKNCYA VPYWRRGQNE EAYHQQRHAI MDQVY
|
| |