Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3379 |
Symbol | panB |
ID | 3965928 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4308309 |
End bp | 4309121 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637922476 |
Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
Protein accession | YP_528846 |
Protein GI | 90023019 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.140885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.310219 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGTACA CAGCTACTCC ACTCGAGAAA AAAGTCACCG TCAACACGCT GCGCAAAATG AAAGCGGACA AAGAAAAATT CATCACCGTT GCGCTATACG ATGCGCCAAT GGCAGCCATG GCACAAAAGT GCGGCGTAGA AGTTGTACTA ATTGGCGATA GCCTAGGTAT GACGGTACTA GGTTACGACA GCACCGTGCC CGTCACCATG GAACAAATGA TCTACCACAT AGAAGCGGTA GCACGTGGTA ACAGCCGCTC ACTTATTATT GGCGACCTGC CATTTATGAC CTATGCCACG GTAGAGCAAA CCATGATTAA CGCCACCCGC GTCATGCAGG CGGGCGCGCA TATGGTAAAA ATGGAAGGCG GCGCTTGGCT GGTCGATTCG GTACGTATGC TGTCCGAGCG CGGCATTCCC GTTTGCGCCC ACCTTGGCCT TACCCCGCAA TCGGTAAATA AATTTGGCGG CTTCCGCGTG CAGGGGCGCT CCGAAGAGCA AGGCGAACAA ATAATCGCCG ATGCCCTCGC GCTAGAAGAA GCGGGTGCAG ACTTACTGGT ATTGGAATGT ATACCTGCGG AACTGGGTGC AAGAGTGACT CAAGCGCTTA GCATCCCCAC CATAGGTATT GGCGCTGGTA TTGGCACAGA CGCACAGGTA CTGGTAATCA ACGATATTCT TGGGCTTACC GAGTTCCCGC CCAAATTTTC TAAAAACTTC CTACTAGAAG CCAAAGATAT ACCCGGCGCA CTGCAAAAGT ACGCAGCAGA CGTTAAATCC GGTGTATTCC CTGGCCCAGA GCAGCAGTTT TAA
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Protein sequence | MVYTATPLEK KVTVNTLRKM KADKEKFITV ALYDAPMAAM AQKCGVEVVL IGDSLGMTVL GYDSTVPVTM EQMIYHIEAV ARGNSRSLII GDLPFMTYAT VEQTMINATR VMQAGAHMVK MEGGAWLVDS VRMLSERGIP VCAHLGLTPQ SVNKFGGFRV QGRSEEQGEQ IIADALALEE AGADLLVLEC IPAELGARVT QALSIPTIGI GAGIGTDAQV LVINDILGLT EFPPKFSKNF LLEAKDIPGA LQKYAADVKS GVFPGPEQQF
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