| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3374 |
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| Symbol | |
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| ID | 3965923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4300485 |
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| End bp | 4303487 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637922471 |
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| Product | two-component sensor kinase CbrA |
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| Protein accession | YP_528841 |
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| Protein GI | 90023014 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.694338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.111505 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTTA GTTTTTTACA GGTTGCGCTT ATTTGCTTTA TTTACTTGGG CGTACTCTTT
GCCATTGCCT TTGCTACCGA GCGCGGCTGG ATTCCCAATA AAATTGTATT TCACCCCGTC
ACCTATATTT TCTCGCTGGG TATTTTTGCC AGTGCTTGGT CTTTTTACGG CGTTATCGAT
TTAGCACAAA ATTACGGCTA TGGCGCACTG GCCTATTACC TCGGCACCGG TGCACTATTT
TTATTCGCCC CCATTGCCCT TAAACCACTT ATAGAGCTGG CGCGCCGATT TCAAATTAAC
TCCACTGCCG ACCTGCTTAC CTTCCGCTAC CACAGCCATT CTGTAGGCGG CATTATTACT
TTGTGCATGC TTATGGCGAT GATTCCGCTA CTCGTGCTGC AAATTCAAGC GGTGGCAGAC
ACCATTCACA TTCTTACTCG CAATAATGGC AGCAGCCTAG ACGGGCCAAG CTCTGGTTTT
GGTACACGTG AAATACTGGC TCTGGTTTAC TGTATTGTGA TTGCCGGCTT TGCCATGCTG
TTTGGCTCCA ACCGCGAGCA CCACAAAGGC TTAATTACCG CCATGGCATT TGAGTCGCTG
GTTAAAATGA CCGGCCTTTG CGCGGTGGGC ATATTCTCGC TGATAACAAT ATTCGGCGGT
CTCGACGGCC TCGACCAATG GCTGCTTGAA AACCCAGATC AACTGGAAAA CCTCTACCAA
CCAACGAAAG AAACTTCCTC CCACACCCTT CTGCTGGTAT TTGTGGCCAC TGCTGTAGCT
ATGCCGCACA TTTTCCACAT GACCGTGGTG GAGAACCCCG TCAAGCATGC CACCCAAACG
GTAACGTGGG CTTTTCCGCT ATTTTTATTG GTAATGGCGT TGCCGGTATT TCCAATTCTT
TGGGCTGGCA TCGAGCTAGA TACGCGTATC CCAGCACAGT ACTTCCCCTT GGCCGTACCC
ATTGCCGCGG GCAGCTCTAC CTTCACAATC ATTTCGTTTG TCGCCGGCTT ATCTGCCGCC
ACCGGCGCAA TGATTGCAAT CGCCCTCGCG CTTGCCACCA TGGTACTCAA CCACTGGATT
CTGCCCGCCA CCCCACTGCA AACTAAACGC GAAATTTACG GCCAGCTCAT TTGGATGCGC
CGTATTCTTA TTGCAGTGGT TATTTTGGTG GGCTTTATGT TCTACCGCTT GCTGGGCAGC
CACTTCAATC TAACCGACTT GGCGCTCACA GCTTTTATCG CCACTCTCCA ATTTTTACCT
GGTGTGATTG CTGTTGCTCA CTGGAGCCGC GGTAACGGCA AAGGCCTATT GGCAGGGCTG
TTTGTAGGTA TGCTCACTTG GATGGTGGGG CTGATGATTC CGCTGGTAAT GGGGTTAAAG
CAAACGCAAT TTACCACCTT AGGTGTAACT TTCGACTTGG GTATTAACCA TTGGAACAAC
ATCACGTTAT GGTCGCTTGG TTTAAACACC CTTACCTTCG TGGTGGTATC GCTTATCACC
AAGCAGTCCG ATGCCGAGCG CTACAGCGCA GAGCTGTGCT CGGAAGATGA GCTCAGCCAC
CCTATTCGCC TTATTCTGGA TATTCGCTCA CCCGACGACA TCGCCAACCG CTTGGCGCTG
CGTATCGGTG AATCTACTGC GCGCACCGAA GTAAGCCGCG CACTTAAAAA CCTTGGCCTC
AACCCCAACG AAAGCCGCCC CTACGCGCTG CGTCGCCTGA GGGATGAAGT AGAAGCCAAC
CTTTCTGGCT TGATGGGTAT TGCCATGGCC AGTGAGATTA TGGATAAACA AATCCCCTTC
AAAATGCCCG AAACCGAAGG CGAAACAGAC ATCAACCTGA TTGAAAGCCG GCTTTCACAG
TTTCGCGACC ACCTCACAGG TTTGGCCGCC GAACTTAACA ACCTGCGCCT ATACCACCGC
CGCACACTCG AAGAGCTGCC GCTATCAGTG TGCTCTGTGG GGCAAGATAT GGAAATTTTA
ATGTGGAATG GCGCCATGGA AGCACTGACC GGTATCGAAA GCACATCGGT AACCGGCTCT
CGACTCGAAG AAGCACTTGA CCCATGGGGC GACCTGCTCA CCCGGTTTGC ACTATCCCAC
TCGCCCCATT TCTACAAGCA AGAAATAGAA CTGGCGGGCA GGCAGCACTG GATTAACCTA
CACAAGGCCT CCATTCCCTC ATCGCTTGCC AACAAAGTAG ACGGGCAAGT GATACTGCTA
GAAGACGTTA CCGAGTTGGT ATTGCTCGAG CAAGAGCTGG TTCACAGCGA ACGCTTGGCA
TCCATCGGCC GACTCGCGGC AGGGGTAGCC CACGAGATAG GCAACCCCGT GACAGGCATA
GCCTGCCTTG CTCAAAACAT GAAATACGAG ACCGACGACC CAGAGATTCT CGACACAGCC
CAGCAGATAT TGTCGCAGAC CGACCGCGTA TCGCGCATTG TTCACTCACT GGTGAGCTTC
TCTCACGCTG GTCAACAAAA AGATGAAGAG CTGCACGCCG TGAATTTGCG CGAATGCGCG
CAAGAAGCAA TTAACTTACT CGCCCTGCAA ATAGAGAAAA AGCAGGTATG CTTCCACAAC
AGCGTGGATG AAGCCATTCA AGTGGTTGCA GATAGCCAGC GGCTTATCCA AATCTTTGTA
AACCTGCTCT CAAATTCTCG CGACGCTTCT GAACCAGACA CCAATGTCAC CATAGAAGCC
AGCCAAGAGG GGCGCACCAC CACCATTAGC GTCACCGACG AGGGGCCGGG TATTCCGCTA
GAAATACGCG ACCGAGTACT CGAACCCTTC TTCACCACCA AAGAGCCCGG CGAGGGCACA
GGCCTTGGCC TAGCTATGGT GTACAGCATT GTGGAGGATC ATCAGGGCAC TTTGGATATT
GTCAGCCCAG TGGATTTGGT GTTACAAAAG GGCACAAAAT TTGTGATCAA ACTTCCCAAT
TCACTTGAAG TTCACGCCGT GAAAGGTAAC ACTAGGAGAT CGACTGCGGC GCCTAAACCT
TAG
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| Protein sequence | MTFSFLQVAL ICFIYLGVLF AIAFATERGW IPNKIVFHPV TYIFSLGIFA SAWSFYGVID
LAQNYGYGAL AYYLGTGALF LFAPIALKPL IELARRFQIN STADLLTFRY HSHSVGGIIT
LCMLMAMIPL LVLQIQAVAD TIHILTRNNG SSLDGPSSGF GTREILALVY CIVIAGFAML
FGSNREHHKG LITAMAFESL VKMTGLCAVG IFSLITIFGG LDGLDQWLLE NPDQLENLYQ
PTKETSSHTL LLVFVATAVA MPHIFHMTVV ENPVKHATQT VTWAFPLFLL VMALPVFPIL
WAGIELDTRI PAQYFPLAVP IAAGSSTFTI ISFVAGLSAA TGAMIAIALA LATMVLNHWI
LPATPLQTKR EIYGQLIWMR RILIAVVILV GFMFYRLLGS HFNLTDLALT AFIATLQFLP
GVIAVAHWSR GNGKGLLAGL FVGMLTWMVG LMIPLVMGLK QTQFTTLGVT FDLGINHWNN
ITLWSLGLNT LTFVVVSLIT KQSDAERYSA ELCSEDELSH PIRLILDIRS PDDIANRLAL
RIGESTARTE VSRALKNLGL NPNESRPYAL RRLRDEVEAN LSGLMGIAMA SEIMDKQIPF
KMPETEGETD INLIESRLSQ FRDHLTGLAA ELNNLRLYHR RTLEELPLSV CSVGQDMEIL
MWNGAMEALT GIESTSVTGS RLEEALDPWG DLLTRFALSH SPHFYKQEIE LAGRQHWINL
HKASIPSSLA NKVDGQVILL EDVTELVLLE QELVHSERLA SIGRLAAGVA HEIGNPVTGI
ACLAQNMKYE TDDPEILDTA QQILSQTDRV SRIVHSLVSF SHAGQQKDEE LHAVNLRECA
QEAINLLALQ IEKKQVCFHN SVDEAIQVVA DSQRLIQIFV NLLSNSRDAS EPDTNVTIEA
SQEGRTTTIS VTDEGPGIPL EIRDRVLEPF FTTKEPGEGT GLGLAMVYSI VEDHQGTLDI
VSPVDLVLQK GTKFVIKLPN SLEVHAVKGN TRRSTAAPKP
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