| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3361 |
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| Symbol | |
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| ID | 3965910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4288575 |
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| End bp | 4289942 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637922458 |
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| Product | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase |
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| Protein accession | YP_528828 |
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| Protein GI | 90023001 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
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| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.110922 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAC ATATTCACAT ATTAGGCATA TGCGGTACCT TTATGGGCAG CATTGCACAG
CTTGCTAAGG CGATGGGGCA CCGAGTGACC GGCTCGGATA CCAATGTGTA CCCGCCAATG
AGCACCCAGC TAGAGCTTGC GGGCATTGAG TTAATACAAG GTTTTGACCC GGCGCAGCTA
GATGACAAAC CCGACCTTGT GGTGGTGGGG AATGTGGTGA GTCGCGGTAA CCCAGCTATG
GAGGCGGTAC TTAATCGCGG TATTCCGTAT ATTTCTGGGC CGCAGTGGCT GGCAGAGAAT
TGGTTGCATC AGAAGTGGGT GCTGGCGGTG TCGGGCACGC ACGGTAAAAC TACCACCACC
AGCATGCTAA CGTGGATATT AGAATATGCA GGTTTTGCGC CTGGCTATTT AATTGGTGGG
GTGCCGGGCA ATTTTGAATC GTCGGCGAGC TTGGGTGAAT CTGATTTCTT CGTTATTGAG
GCCGATGAGT ATGACACGGC GTTTTTCGAT AAACGCGCAA AGTTTGTTCA CTATCGTCCG
CGCACACTCA TTATTAATAA TTTAGAGTTT GATCACGCGG ATATATACCC CGACCTCGCC
GCCATTCAGC GTCAATTCCA TCACTTGCTG CGAATGCTGC CCGCTGATGG GTTATTGCTT
GCCCCCAATG GTGTGGCCGC CATTGATGAA GTGGTAGAGC AGGGGTTTTG GAGCGATAAG
CAAACTTTGG GCGACGACTG GCAGGTAAAA CTACACGCCG AAGATGGCTC TCAATTTGAC
GTTGTGTTTG ATGGCGAAAG CGCAGGGCAA GTTACATGGG GGCAAACTGG GCTGCACAAT
GTAAGTAATG GTCTGGCGGC TATAGCGGCC GCGCGTCATA TAGGTATAGC TCCTGCTCTT
GCCTGCGAAG CGCTGTGCGC GTTTAAAGGT GTGAAGAGGC GTATGGAGCT GATCGCGCAA
ACAGATCGCG TTAATTTGTA TGACGACTTT GCCCACCATC CCACGGCTAT TCAAACAACC
CTAGAAGGCT TGCGCGCGAA GGTGGGTAGC GAACGTATTG TGGCTATTAT CGAGCCGCGG
TCCAACACCA TGAAAATGGG CGTGCACAGG CAGCAGTTGC TTAGTTCTGC GCAGGCAGCA
GATAACGTGT TGTGGTTTGA ATCGGCAGAT GCCAAATGGT CGCTTAAAGC CGAGCTGGAT
AAGCCCGCGC AAGGGTCGCA AGTTTGCACT AACTTAAGCG AGCTGGTTGC CAGTGCCGTG
TCCAACTTGG GTGATGGCCC CGCACATATT GTTGTAATGA GTAATGGCGG GTTTGGTGGA
GTACATAATT TATTAGCAGC AGCAATTCAG GAGCTACCCC ATGAGTAA
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| Protein sequence | MSKHIHILGI CGTFMGSIAQ LAKAMGHRVT GSDTNVYPPM STQLELAGIE LIQGFDPAQL
DDKPDLVVVG NVVSRGNPAM EAVLNRGIPY ISGPQWLAEN WLHQKWVLAV SGTHGKTTTT
SMLTWILEYA GFAPGYLIGG VPGNFESSAS LGESDFFVIE ADEYDTAFFD KRAKFVHYRP
RTLIINNLEF DHADIYPDLA AIQRQFHHLL RMLPADGLLL APNGVAAIDE VVEQGFWSDK
QTLGDDWQVK LHAEDGSQFD VVFDGESAGQ VTWGQTGLHN VSNGLAAIAA ARHIGIAPAL
ACEALCAFKG VKRRMELIAQ TDRVNLYDDF AHHPTAIQTT LEGLRAKVGS ERIVAIIEPR
SNTMKMGVHR QQLLSSAQAA DNVLWFESAD AKWSLKAELD KPAQGSQVCT NLSELVASAV
SNLGDGPAHI VVMSNGGFGG VHNLLAAAIQ ELPHE
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