Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3331 |
Symbol | |
ID | 3965880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4258185 |
End bp | 4259624 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922428 |
Product | hypothetical protein |
Protein accession | YP_528798 |
Protein GI | 90022971 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00577247 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTGTTA ATACCTTCGA CCCCTCAAAG GCTAGCCCCG TTACCCATGC ATCAGATAGC GCCAGTAAAA CCCCTGAGCC TAACGCGGTT GCAGCACCAA GCTCCGAGTT AGGCAACAGA GTCGGGTTTG TATCCTTGGG CTGCCCAAAG GCACTAGTGG ATTCCGAGCG CATTCTTACC CAGCTTAAGT TGGATGGCTA CGACGTGGTG CCAAGCTATA ACGATGCCGA TGTGGTGGTA GTTAACACCT GCGGCTTTAT CGATAGCGCC AAGCAAGAGT CCCTCGATGC TATTGGCGAA GCCATGAAAG AAAACGGCAA GGTGATTGTT ACGGGTTGCA TGGGCAAGGG TAACGATGCC CAAGTTATTA AAGAAACTTA CCCCAATGTA TTAAGCGTAA CTGGCCCGGC GGCTTACGAA GAAGTAATGG GGGCTGTGCA CGGTTATATA CCGCCGAAAA AAGAGCACAA CCCACTTATC GATTTAGTAC CCCCACAGGG TGTAAAACTT ACACCGCGCC ATTACGCCTA TTTAAAAATT AGCGAAGGCT GTAACCATCG CTGCACATTT TGCATTATTC CAGATATGCG CGGCGACCTA GTTAGTCGAC CCATCGGTGA TGTATTAGGT GAAGCCGAAC GCTTAGTGGC AGCGGGCACC AAAGAAATTT TAGTTATTTC ACAAGATACC AGTGCTTACG GCGTAGATGT AAAATACCGC ACCGGTTTTT GGCAGGGTCG CCCGGTTAAA ACACGCATGC TTGAAATGTG TGAAGCGTTG GGCGAGTTAG GTGCGTGGGT GCGTTTACAT TATGTGTACC CATACCCGCA TGTAGATAAC GTAATACCAC TTATGGCTGA AGGCAAAATT CTGCCGTATT TAGATATTCC TTTTCAACAT GCATCGCCAC AAGTATTAAA AAATATGCGT CGCCCCGCGC ACCAAGAAAA AACTTTAGAG CGCTTAGCCA AGTGGCGAGA AATGTGCCCA GAGCTTGTAT TGCGTTCTAC ATTTGTTGTT GGCTTTCCCG GCGAAACAGA ACAAGATTTT CAAATTCTTT TAGATTGGCT GCAAGAAGCA CAATTAGATC GCGTAGGGTG TTTTGAATAT TCCCCCGTTG AAGGCGCAAA AGCGAACGCA TTACCCAACC ACGTGCCCGA CGAAGTAAAA CGCGAGCGCT GGGAACGTTT TATGGAAACC CAGCAAGCTA TTTCGGCAGC CAAGCTCAAA CAAAAAGTCG GCTACGAAAT GGATGTGATA ATCGACAGTA TCGACGGCGA TATAGCCACC GGCCGCACTT ATGCCGACGC ACCAGAAATT GATGGTGTAG TTACCTTTAG TGGCGCAGCA GGTATGAAAG TAGGTGAGTT TTCTGCGGTA GAAATAACCG GGTCGGATGA TTACGATTTG ACTGGTATTG CGGTAGAAGA TGAGCAATAA
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Protein sequence | MTVNTFDPSK ASPVTHASDS ASKTPEPNAV AAPSSELGNR VGFVSLGCPK ALVDSERILT QLKLDGYDVV PSYNDADVVV VNTCGFIDSA KQESLDAIGE AMKENGKVIV TGCMGKGNDA QVIKETYPNV LSVTGPAAYE EVMGAVHGYI PPKKEHNPLI DLVPPQGVKL TPRHYAYLKI SEGCNHRCTF CIIPDMRGDL VSRPIGDVLG EAERLVAAGT KEILVISQDT SAYGVDVKYR TGFWQGRPVK TRMLEMCEAL GELGAWVRLH YVYPYPHVDN VIPLMAEGKI LPYLDIPFQH ASPQVLKNMR RPAHQEKTLE RLAKWREMCP ELVLRSTFVV GFPGETEQDF QILLDWLQEA QLDRVGCFEY SPVEGAKANA LPNHVPDEVK RERWERFMET QQAISAAKLK QKVGYEMDVI IDSIDGDIAT GRTYADAPEI DGVVTFSGAA GMKVGEFSAV EITGSDDYDL TGIAVEDEQ
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