| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3310 |
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| Symbol | holA |
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| ID | 3965821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4221882 |
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| End bp | 4222928 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922407 |
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| Product | DNA polymerase III subunit delta |
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| Protein accession | YP_528777 |
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| Protein GI | 90022950 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1466] DNA polymerase III, delta subunit |
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| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0143934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGCA TCAACGCAGA CCAACTCGCC AGCCATATCA AAAACGCCCT GCCACCCGTT
ATTTTAATTA CCGGTGACGA AGCCCTAGTG GTACAAGAAA GCTGCGATGC AGTGCGCGCC
GCCGCACGCA AACAAGGCTT TACCGAGCGC GAGTTACACC ACACCGATGC AGGGTTTTCG
TGGGATCAAT TATTACAAAG CGCCAACAGC TTAAGCCTGT TTTCTGAAAA GAAAATAATT
GAAATACGCG TTACCAACGG CAAGCCCGGC GATGCGGGCA GTAAAGCGTT GGTTGAGCTG
TGCCAAAAAC CAAGCGCAGA CACTCTCATA CTATTGGTAT TCCCCAAAAT AGATAAGCGC
GCGCAAAACA GTAAATGGTT TAAGGCGTTA GAAGCTATTG GCTGTATTGT TACCGTATGG
CCTGTTGGGA TGCCGCAACT ACCACGCTGG ATAGATCAAC GCTTAAAAGC TGCAGGGCTG
CGCGCAGATT CCGCTGCCAT AGATATTCTA GCCGCCAAAG TAGAAGGCAA CCTACTTGCC
GCCGCACAAG AAATTGAAAA ACTTAAATTA GTTGCAACCA ACGAGCTTAT AGATAGCCAA
TTAATGACCT CCGCGGTAAT GGAGTCGGCG CGCTACGACG TATTTGGTTT GTTAGATAAA
GCCCTGCTGG GCGATGCGCA AGCGGCAAGC CGCACTCTAC TTGGGCTAAA AGGTGAAGGC
ACCGAACCTA CCGTTATTTT GTGGGCCCTT ACTCGCGAAG CGCGCATTTT AGCCAGCATT
AAAGAAGCCA CCGACGCGGG TGAGCACTTC GGCCAAGCGG CAAAACGCAA TGGAGTGTGG
GACAAGCGCC AGCGTTTAGT ACAACAAGCA TTAAGCCAGC AATCGGCAAA AAAATTACAT
ATGCTACTGC GTAAATGCGC CCTTGCTGAT CGCACTATTA AAGGTATGTC GCGCGGCGAT
GCTTGGGCAA TATTGCTAGA TATTACCTTG AGTTTAGCGG GGGTAGATAG CTTTACTCCA
CGCACCCAAC GGGCAATGAT CCGCTAA
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| Protein sequence | MARINADQLA SHIKNALPPV ILITGDEALV VQESCDAVRA AARKQGFTER ELHHTDAGFS
WDQLLQSANS LSLFSEKKII EIRVTNGKPG DAGSKALVEL CQKPSADTLI LLVFPKIDKR
AQNSKWFKAL EAIGCIVTVW PVGMPQLPRW IDQRLKAAGL RADSAAIDIL AAKVEGNLLA
AAQEIEKLKL VATNELIDSQ LMTSAVMESA RYDVFGLLDK ALLGDAQAAS RTLLGLKGEG
TEPTVILWAL TREARILASI KEATDAGEHF GQAAKRNGVW DKRQRLVQQA LSQQSAKKLH
MLLRKCALAD RTIKGMSRGD AWAILLDITL SLAGVDSFTP RTQRAMIR
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