| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3254 |
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| Symbol | |
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| ID | 3965744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4153099 |
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| End bp | 4153728 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637922349 |
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| Product | GntR family transcriptional regulator |
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| Protein accession | YP_528721 |
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| Protein GI | 90022894 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
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| TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.216885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0301472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACACT CCCCTAATGC CTACCCCCAG CACACTGCAC GCCACTTTTT TGCCCGCACC
AAACAGCTAC TTATACTGCT TGGCGTAAGC CTTTACCTTG GTGGCTGCTC GCTTACCCCT
ACCAAGCAGC CAAACCTGCA AAGCAAAGAC GAGCTATACA CGCTGGATAG CTGGCGCGCG
AGCGGCAAGC TAGGCACCCG CTACAAGGGT AAAAACGAAA GCGCATTTTT TTCTTGGACC
CAAACCGGCG ACGATTACAC CATTCACCTA TACGGCCCCC TCGGCCAAGG CAGTGTGTAT
TTATATAAAG AGGGCAACAG CTTCCGCATA GAGTCTAAAG ACCTAAACGA ACATGCCGCC
AGCCCAGAAC AATTACTACA GCGCACCACC GGCCTGCAGC TACCCGTTAG CAACCTCGCC
TACTGGCTGC GCGGTATTCC CGCCACCAGC ATTTCGGCCG ACAAAACCCA ACACAACGAA
GACGGCGACT TAAGCGCACT GCAGCAAGAA GGCTGGGAAA TAACCTACCG CAGCTATATG
CCTGCCTACG GCCTAAATAT GCCCGAAAAA ATCATCGCCA AGCGCAAAGA CATCAAACTC
ACGGTTTCGA TAAAATCCTG GGACATATAA
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| Protein sequence | MPHSPNAYPQ HTARHFFART KQLLILLGVS LYLGGCSLTP TKQPNLQSKD ELYTLDSWRA
SGKLGTRYKG KNESAFFSWT QTGDDYTIHL YGPLGQGSVY LYKEGNSFRI ESKDLNEHAA
SPEQLLQRTT GLQLPVSNLA YWLRGIPATS ISADKTQHNE DGDLSALQQE GWEITYRSYM
PAYGLNMPEK IIAKRKDIKL TVSIKSWDI
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