| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3180 |
|---|
| Symbol | |
|---|
| ID | 3965633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4055864 |
|---|
| End bp | 4056316 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637922277 |
|---|
| Product | response regulator receiver sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_528649 |
|---|
| Protein GI | 90022822 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGTTG AAACTATCCT AACCTTAGAT TGCACCCGCT CGAAAATAGT TGGTGGCAGC
AAAAAACGTG TGCTCGAACA GCTTGCACAA ATTTTCTCTC ACTCTGTAGA AGACTTGAGC
GAAGACAGCC TGTTCCAAAG CCTCATTGGG CGAGAGCGCT TAGGCTCTAC CGGCATAGGC
GATGGTATAG CTATCCCCCA CTGCCGCTTT GCAACTGGCG GCGAAACTTT TTGCGCTTGC
ATCACCCTTG AAGAACCCGT CGACTTTGAT TCGATCGACA ACAAACCGGT AGATGTAATA
TTCGCAATGG TAGTACCAGA AGACGCCAAC AGCGAACACT TAGCCACCTT GGCTAGCCTT
GCAGAGAAAC TGCAAAAACC AGAATTTGTT AAGGGTTTAC GCAACGCCAC TTCCGACGCG
CAATTGTTTA ACGCGGCTGT GTCGGCCTGC TAA
|
|---|
| Protein sequence | MLVETILTLD CTRSKIVGGS KKRVLEQLAQ IFSHSVEDLS EDSLFQSLIG RERLGSTGIG
DGIAIPHCRF ATGGETFCAC ITLEEPVDFD SIDNKPVDVI FAMVVPEDAN SEHLATLASL
AEKLQKPEFV KGLRNATSDA QLFNAAVSAC
|
|---|
| |