Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3142 |
Symbol | |
ID | 3965576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4017246 |
End bp | 4018148 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922239 |
Product | heat shock protein HtpX |
Protein accession | YP_528611 |
Protein GI | 90022784 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.8089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTGTGT TACGCATTGG TTTGTTTTTA TTAACCAATA TCGCGGTAAT TGCTGTAGCG AGTATTACTC TTAGTTTGCT TGGTGTTGGC AGTTACCTCG ATGAGTCTGG CAGCGGTTTA AACCTGCAGG CACTGCTTAT TTTTTGCGGT GTGTTTGGGT TTACTGGTTC GCTATTTTCG CTATTTATTA GCAAGTGGAT GGCCAAGCGC ACGACTGGCA CACGCATTAT TGATGTGCCG CGTACTGCAG ATGAGCGCTG GTTATTAGAA ACGGTGCAGG AGCTAGCGCA AAAAGCCGGT ATTGGTATGC CCGAGGTAGG TATCTTCCCA GCGCAACAGT CTAATGCTTT TGCTACAGGT TGGAATAAAA ACAGCTCGCT TGTGGCCGTA AGCTCTGGCT TGTTAACGCG CTTTAACAAA AACGAAGTGC GCGCGGTGCT TGCCCATGAA ATAGGCCACG TGGCTAACGG CGATATGGTT ACCTTAGCGC TGATACAAGG TGTAGTGAAT ACCTTTGTGA TGTTCTTCGC TCGTATAATT GGGCATTTTG TTGATCGGGC TATTTTTAAA ACCGAGCGCG GCCACAGCTT TGGCTACTAC ATAGTTGTAT TTGTTACCGA GATGGTTTTG GCCGTATTGG CGAGCATGAT TGTGGCTTGG TTCTCTAGGC GCAGGGAATA CCGAGCAGAC TACGCCGGTG CAACCTTGGC CGATCGCAAT TCGATGATTG CGGCTTTAGC GCGTTTGCAG GCCGAAACTC AAGCTAAGGT GCCCAATGCC ATGCCAGATA CCCTTACCGC ATTTGGTATC TCGTCTGGCT TTAGCAATAA AATGATGGGG GCGTTTGCTA GCCACCCACC GTTAGAGGAT CGTATTCGCG CTTTGCAAAA CTTGCACTCT TAA
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Protein sequence | MSVLRIGLFL LTNIAVIAVA SITLSLLGVG SYLDESGSGL NLQALLIFCG VFGFTGSLFS LFISKWMAKR TTGTRIIDVP RTADERWLLE TVQELAQKAG IGMPEVGIFP AQQSNAFATG WNKNSSLVAV SSGLLTRFNK NEVRAVLAHE IGHVANGDMV TLALIQGVVN TFVMFFARII GHFVDRAIFK TERGHSFGYY IVVFVTEMVL AVLASMIVAW FSRRREYRAD YAGATLADRN SMIAALARLQ AETQAKVPNA MPDTLTAFGI SSGFSNKMMG AFASHPPLED RIRALQNLHS
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