| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3119 |
|---|
| Symbol | |
|---|
| ID | 3965519 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3984897 |
|---|
| End bp | 3987482 |
|---|
| Gene Length | 2586 bp |
|---|
| Protein Length | 861 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922216 |
|---|
| Product | Signal transduction histidine kinase-like |
|---|
| Protein accession | YP_528588 |
|---|
| Protein GI | 90022761 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTAATT CATCAACTAC CCACTTGGCT AAGAACCAAC GTATTCGCCT AATTAACAGT
ACTTGGGCGG CAGGCGGTGG TGTGCTGTTG TCGTTTGTCG CCTATTACTC TACAACTATG
GGGTTATTTC TAGGGGATAA AAACGTACTC ATTTGGGTAC TTGTTGGCTT CTGGCTTGGC
AACTTCGCCT TTATTGGCAC CATCGCATCT GGGTTAAACA AGCGCTTTCG CGACCCAGCA
CTTACCCTGC CTCAAATGTA CTGGGCGGTT TCCACCACCA ATATTGCACT CATGTTCACA
ACGCAATTAG ATGTGCTTTA CTACTTGCTA ATAATGTTAA CAATGGTGTT TGGTATATTT
CGATTAAGCG TTCGGCAATT TAATGTTTTT TGCTATTTCG CTATAGCTCA ATTGCTACTA
TCGCTGTTTG TTCGCTATTC CCTCTATGCT TCAGACGCAA TCGGCACCCT TATTATAAAT
TGGGTTGCCT TCGGCTTTTG CGCTATCACA CTAACGGCAT TATGTAATTC CATAGTGCGA
TTGAGACACA GGCTAAAACA AAAAAATGAA GAGCTAAGCG AAGCTTTAAA GGCAAAAAGT
GAGTTTCTAG CTAACATGAG CCATGAAATT AGGACGCCAA TGAATGGCGT AATAGGTATG
CTAGATGTAG CGCTTCTATC TGAAACCTCA CCAGAAAAAC ATCGCTACCT AAGCGTGGCT
CGAAATAGCG CACAATCGCT ACTAGGTATT ATCAACGACA TTTTAGACTT TTCTAAAGTA
GAAGCCGGGA AGCTAGAATT AGAAGCCATA GACACCGACA TAGACGATCT TGTACACGAG
GTGCTCGTTA ATTTTAGTGG CCTGGCCGAA CAAAACGACG TTGAGCTTAT TGCAGATATC
TCCCCTACCA TATCGCATTT AGTTAAATGC GACCCAGGCA GAATAAAACA AATATTAAAC
AACCTTGTAG GCAACGCCTT AAAATTTACG CCGCACGGCG AGGTACTGGT TAAAGCGAGA
GCGGAAAAAC TTGTTTCTGG TCGTATACAG CTGCATTTTT TAGTACGCGA TACAGGCATA
GGCATTGCCG CGCAAAATCA AAAACACCTG TTTGACTCAT TCACTCAGGC CGACACATCC
ACTACGCGCA AGTATGGTGG TACCGGCTTG GGGCTTTCAA TCGCTAAGCG ATTGTGCGAA
ACGATGAATG GGGCGATTTC CCTCGAAAGT TACGAAGGCA AAGGCAGCAC TTTTGCTTTT
TTTATCGAAG TAGAAGCAAG TGAAGAACGG CCTCCCAAAG CCATACTACC GGAATATATA
CGAGATTTCA GAGTACTCGT TGTTGATGAC AACGCAACAA GTCGTGCAGT AATAACCAAA
TACTTAGAAT ATTTGGAAGT GCATGTAGTT GCTGTTGAGA ATGGAAAACA AGCGCTTACC
CGCCTAGCGA ATAACACAAC ATTCGACGCA GTAATTATTG ACCGGCAGAT GCCCGGCATG
ACTGGCGACA CACTTGCCCA ACAGATCCGT ATGCAACAAA ACGATGAGCG CGTGCCCATC
ATTATGCTTT CTAACATGAA AGCAGAAGGC GCCAGCAACC TTATTACCGA ATTGCGCCTC
GCAGCATACA TAACCAAACC GCTGCGCGCA AATCAACTGT ACACCGCTTT AGGCTTTACC
TTTAACAGTG CATGCTACAT AAGTGAAAAC GCACCTAATA GCGACACCGC CGATACGCCA
ACAGACACCG CTCCACTGCC AACTATCACA AAGCCTACAA ATAAAGAAAG AAAGAAAATT
TTATTAGTTG AAGACAATAA AACCAATCAA GAAGTGGCCT TACTTACCTT AGAAATTCTC
GGTTACAACG CAGATGTCGC TAATCACGGT GGCGAAGCAA TAGAAATATT AAAGCAGCAA
TCGGATAGCG AACAACACTA CGGTGCCATT TTAATGGATT GCCAAATGCC GGTTTTAGAT
GGCTACAAAA CCACAGAAAC CATCCGTTCG GACGCAGCCC TATCGGCTTT CAAATACATA
CCCATTATCG CTCTCACAGC TAATGCACTA CGTGACGACA AGGAAAAGTG TTTAGCGGCA
GGCATGAATG ACTTTTTAAG TAAACCTATC GATTCCGCCA AACTGGGCGC CACACTGGCA
CATTGGTTAC ACGAAGAAGC TCAACCAGAG ATTAGCCCCC CTCCTAAGAA AAAGTCGGCT
GTAACCGAAG CAGAAGAGTC TCTAGTTTGG AATAGAGCTG AGCTTGAACG ACTAGTAGGC
AACAACGCGC AGCGCGCCTA CAAATTAATA TCTGGGTTTG TGGCAAGTCT TGTAGCTATG
CGTACCGAAC TGGAGGCGCA TATTGACGGC AAACGGTATA GCGATGCAGC CAACACTCTG
CACGGTTTAA AAGGTGCGGC TTCCAACATG CGGGTTAATA AATTAGCCGA GGCGGCAGGT
AATTTTGAAC ACGCACTAAA GTACGAAAGC ACTGCGACTA TCGCGAGCTC TCAGGAACAT
TTTGTCGAAC AGCTTGAAAT TGCAGTCAGT CATTTAAGCG AATATTTGGA AACCCATGAA
CAATAG
|
|---|
| Protein sequence | MTNSSTTHLA KNQRIRLINS TWAAGGGVLL SFVAYYSTTM GLFLGDKNVL IWVLVGFWLG
NFAFIGTIAS GLNKRFRDPA LTLPQMYWAV STTNIALMFT TQLDVLYYLL IMLTMVFGIF
RLSVRQFNVF CYFAIAQLLL SLFVRYSLYA SDAIGTLIIN WVAFGFCAIT LTALCNSIVR
LRHRLKQKNE ELSEALKAKS EFLANMSHEI RTPMNGVIGM LDVALLSETS PEKHRYLSVA
RNSAQSLLGI INDILDFSKV EAGKLELEAI DTDIDDLVHE VLVNFSGLAE QNDVELIADI
SPTISHLVKC DPGRIKQILN NLVGNALKFT PHGEVLVKAR AEKLVSGRIQ LHFLVRDTGI
GIAAQNQKHL FDSFTQADTS TTRKYGGTGL GLSIAKRLCE TMNGAISLES YEGKGSTFAF
FIEVEASEER PPKAILPEYI RDFRVLVVDD NATSRAVITK YLEYLEVHVV AVENGKQALT
RLANNTTFDA VIIDRQMPGM TGDTLAQQIR MQQNDERVPI IMLSNMKAEG ASNLITELRL
AAYITKPLRA NQLYTALGFT FNSACYISEN APNSDTADTP TDTAPLPTIT KPTNKERKKI
LLVEDNKTNQ EVALLTLEIL GYNADVANHG GEAIEILKQQ SDSEQHYGAI LMDCQMPVLD
GYKTTETIRS DAALSAFKYI PIIALTANAL RDDKEKCLAA GMNDFLSKPI DSAKLGATLA
HWLHEEAQPE ISPPPKKKSA VTEAEESLVW NRAELERLVG NNAQRAYKLI SGFVASLVAM
RTELEAHIDG KRYSDAANTL HGLKGAASNM RVNKLAEAAG NFEHALKYES TATIASSQEH
FVEQLEIAVS HLSEYLETHE Q
|
|---|
| |