| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3034 |
|---|
| Symbol | |
|---|
| ID | 3967698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3875326 |
|---|
| End bp | 3877113 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922131 |
|---|
| Product | ATP-dependent RNA helicase DeaD |
|---|
| Protein accession | YP_528503 |
|---|
| Protein GI | 90022676 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000047314 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000137402 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT CCAGCCCCAA TTTTGCTCAA CTGGGCCTAA ATGAACACAT TCTTAAAGCA
CTAACAGACG TTGGTTACGA AACCCCCTCC CCCATTCAGG CCAAAAGTAT TCCTGAGTTA
TTAGCTGGAC GAGATATTCT GGGCCAAGCC CAAACCGGTA CGGGAAAAAC CGCAGCATTT
GCTCTACCAA TACTTAACAA CCTAGACCTA AGCCAAAAAG CGCCACAGGT TCTAGTACTT
GCACCTACCC GCGAACTAGC CATTCAGGTA GCAGAAGCAT TTCAATCATA CGCCCATCAC
TTGCCCGGCT TCCACATTCT ACCTATCTAC GGTGGCCAAG GGTACGACCA GCAAATACGC
GCACTGAAGC GCGGTGTTCA CGTTATTGTG GGCACACCCG GTCGTGTTAT GGACCATATG
CGTAAAGGCA CGCTAAAGCT AGACCAACTT AAAGTATTGG TACTAGACGA AGCCGACGAA
ATGTTGCGCA TGGGCTTTAT TGACGACGTT GAATGGGTAC TCACTCAAAC CCCACCTACC
CGCCAAATCG CGCTATTTTC GGCTACCATG CCTAAAGAGA TTGCTAAGGT TGCTAACAAA
TACCTTAACG ACCCAGCGCT TATTAAGATT GAAGTTAAAA CCCAAACCGC CGACACCATT
CGTCAGCGTT ACTGGGGCGT GAGCGGCCAC CACAAGCTAG ATGCCACTAC GCGCATACTC
GAAGCGGAAG AGTTCGACGC GATGATTATT TTCGTGCGTA CCAAAACCAC AACTATCGAG
CTGGCAGAAA AACTGGCCGC ACGCGGCTAC TCCAGTGCGG CACTTAACGG CGACATCTCG
CAAAACCTGC GTGAGCGCAC CGTAGAGAAG TTGAAAAAAG GCCAAATTGA TATTCTAGTT
GCTACCGATG TAGCGGCACG CGGCCTAGAC GTAGATCGCA TTAGCCACGT ACTAAACTAC
GATATTCCCT ACGATTCAGA AGCTTACGTG CACCGCATCG GCCGTACAGG CCGCGCTGGT
CGCTCGGGCG AAGCCATTCT TTTTGTTGCA CCGCGCGAAA TGCGTATGTT GCGCACAATA
GAAAAAGCTA CCCGCAAGCC TATCGAACTA ATGAAAATGC CAAGCACGGA TGATATTAAC
CAAATTCGTG TTGATCGCTT TAAACAAAAA ATATTGGATG CAGCCAAATC ACCAGGCCTA
GAGTTTTTCC GCAAGCTCGT TACCGAAATG CAACACGACA ACGAACTGGA TACTGCCGAC
ATAGCAGCAG CGCTTGCTCT TCTATACCAA GGTGACCAAC CACTATTGTT GGAAGACCGT
CCTCAGCGTC AACAGCGTGA ATTTAAAGAG CGCGATGGCG ACTTCGATAA ACGCGGCCGT
GGCGACAGAG ATGGCCGTGG ACGCGAAGGT CGAGATCGCG GTAAAGGCCG TGAAAAAGAC
GAAAACATGG AGACCTACCG TATAGAAGTA GGCCGCAAAG ACGGTGTTAA GCCTGGCGAC
ATTGTTGGCG CCATTGCCAA CGAAGCAAAT ATTAGCAGCA AGTTTATTGG CCACATTAAA
CTGCACGACG ACTTCAGCAC CGTAGACTTG CCATCAGGTA TGCCCAAAGA AGTTTTCGAA
ACCCTAAGCA AAACTTGGGT TTGTCAAAAG CAGCTGCGCA TTACCCGTGC AGAAGGCAAC
GCTGGCGGTG GTCGAGGCCG TGGTGGTGAC GACTTCAAAC GCAAAAAACG CCCAGCCAAT
AAAGATGGCG CACCGCGTAA ACCAAGAGCC AAAAAAGCCG ATAGCTAA
|
|---|
| Protein sequence | MTESSPNFAQ LGLNEHILKA LTDVGYETPS PIQAKSIPEL LAGRDILGQA QTGTGKTAAF
ALPILNNLDL SQKAPQVLVL APTRELAIQV AEAFQSYAHH LPGFHILPIY GGQGYDQQIR
ALKRGVHVIV GTPGRVMDHM RKGTLKLDQL KVLVLDEADE MLRMGFIDDV EWVLTQTPPT
RQIALFSATM PKEIAKVANK YLNDPALIKI EVKTQTADTI RQRYWGVSGH HKLDATTRIL
EAEEFDAMII FVRTKTTTIE LAEKLAARGY SSAALNGDIS QNLRERTVEK LKKGQIDILV
ATDVAARGLD VDRISHVLNY DIPYDSEAYV HRIGRTGRAG RSGEAILFVA PREMRMLRTI
EKATRKPIEL MKMPSTDDIN QIRVDRFKQK ILDAAKSPGL EFFRKLVTEM QHDNELDTAD
IAAALALLYQ GDQPLLLEDR PQRQQREFKE RDGDFDKRGR GDRDGRGREG RDRGKGREKD
ENMETYRIEV GRKDGVKPGD IVGAIANEAN ISSKFIGHIK LHDDFSTVDL PSGMPKEVFE
TLSKTWVCQK QLRITRAEGN AGGGRGRGGD DFKRKKRPAN KDGAPRKPRA KKADS
|
|---|
| |