| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3032 |
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| Symbol | |
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| ID | 3967696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3872852 |
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| End bp | 3874633 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922129 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_528501 |
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| Protein GI | 90022674 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.648207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000529243 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAATTAG CTACCCACGC CAATACAGAT ACCCTAGCCC CTCTCTTTTT GCTTATTGAA
GCGAATAACC AAGACGCAGA TATACTTGAA ATAAGGTTGC GAGACGCGTA CCAACACCAC
CACGCGGTAC TCGCTGTAGA TTCGGTTCAA GCCGCTAGCG AAGCGCTTAC AGACTTTGAG
TTCGACGCGC TTATTTATTG CTCTAGCACA GAAAACCTAA ACACAACCGA TACAGTAAAA
GCGTTTTGCG AACTTACGCC AAACTTACCC ATTATTGTAA TTACCGACGA TAACGACTTT
AGCTTAGCCA ACCAAATTAT CGCTAGCGGT GCAGAAGATT ACTTGCATAA AAACGAACTA
ACCGCGGAAG CGCTATTGCG CAGCTTAGCG TTTGCCACAC AACGAAAAAA AGCGCAAACA
TCGCACTTAT TACACAGCCA CTCTTCATTG GGCACCGATT CTATTCACGA CATAACAACC
AATCAAAACC CGCTACAACA AGATTCTTTA ACAGAAATAC ACAACTTAAG TTATTTTTAC
AATTACGCAA CCACAGCCAT TTTTCGCGCA CAACGTGCAA ACGCTCAGCT AGCTGTTTTA
TTATTTGATA TAAACGACTT CGAGCTAATT AACCAACAGT TTGGCCGTCA CACTGGCGAC
CAGCTTTTAC AGTTAGTTGC TAAACGTTGC GAAAACATTG TGCGCCACAC TGAATGTATT
GCACGCCTAT ACGACGATAC CTTTGCAATT ATTACCGATA CCCTAAACCA CGAGCACGAA
GCCTACCCGC TGGTAACGCG CCTACAACAA TGCTTTGACT CACCATTCGA AACGTCGCAA
AAGCAAATAG TTGCAACGCC CTCTATTGGG GTTGCATTTT TACCTCAACC TGCAGATTTA
AACCATTGGG TAAAACAAGC AGACGCAGCC AAAACCCAAG CCAAAGCCAG CGCTAAAACC
AACGTTGAAT TTGCAAGCGA ATCGGCATCG GCCGGCTACA AGCGCACACA AAGTGTTGCA
GCCAAAATAG AAAAGGGTTT ACAGGGCCGT GAGTTTAGTA CGGTTTTTCA AAGCTATTAT
TGCGATGACG ACAGCAACCC ACTGTATGCA GAGGCGTTTA GCCGCTGGCG CTCTACAAGC
CTAGGCAATG TAGCCCCGCG TGAGTTTTTA CCAGCACTCA GCCAAAACAG CATGTTAGAT
GAATTAACCA AACAGGTGCT TGCCAATGTG GCACAACTGC AAGAGCAAGC ACTTGCCGCT
AATAGGCCTA TAGGGAAATT TAGCGTAAAT ATTAGTACGG CTCAGTTACA CGACCGCATT
TTTTGCGAAA ACTTTTTACA CTGGCTAAGC GTAAACGACT TAAGCTCAAA CACTATTTGT
TTAGAAATTT CTGAACGCGA AAGCATTAAT GCCATTCTTG CGTGCAAAAG TAATATCCAC
TTTTTACACC AGCAGGGCAT TAGTTTTGCG CTAGATAATT TTGGCACCGG CAATACAGCC
ATGACCCAAC TAGCAGACCT ACCCATAGAT TACTTAAAAA TAGACCGCGC CATAACCCAA
AACATAGATA CCAACAAACC CATGCAGGCA CTTAGCTCTA GCGTAATAAA AATGGCGCAC
AAGCTGGGCA TAAAGGTAGT AGCTGAAGGC ATAGAAACGC AGGAAGAGTT TTACGTACTG
CGCGCATTCG ACTGCGACTT CTACCAAGGC TTCTATTTTG GCCAACCCTG TAATTCACAT
ACGTTGATGC AAGAACAAAC CGTAGACATG AGGGCGCATT AA
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| Protein sequence | MQLATHANTD TLAPLFLLIE ANNQDADILE IRLRDAYQHH HAVLAVDSVQ AASEALTDFE
FDALIYCSST ENLNTTDTVK AFCELTPNLP IIVITDDNDF SLANQIIASG AEDYLHKNEL
TAEALLRSLA FATQRKKAQT SHLLHSHSSL GTDSIHDITT NQNPLQQDSL TEIHNLSYFY
NYATTAIFRA QRANAQLAVL LFDINDFELI NQQFGRHTGD QLLQLVAKRC ENIVRHTECI
ARLYDDTFAI ITDTLNHEHE AYPLVTRLQQ CFDSPFETSQ KQIVATPSIG VAFLPQPADL
NHWVKQADAA KTQAKASAKT NVEFASESAS AGYKRTQSVA AKIEKGLQGR EFSTVFQSYY
CDDDSNPLYA EAFSRWRSTS LGNVAPREFL PALSQNSMLD ELTKQVLANV AQLQEQALAA
NRPIGKFSVN ISTAQLHDRI FCENFLHWLS VNDLSSNTIC LEISERESIN AILACKSNIH
FLHQQGISFA LDNFGTGNTA MTQLADLPID YLKIDRAITQ NIDTNKPMQA LSSSVIKMAH
KLGIKVVAEG IETQEEFYVL RAFDCDFYQG FYFGQPCNSH TLMQEQTVDM RAH
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