| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3024 |
|---|
| Symbol | |
|---|
| ID | 3967688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3863233 |
|---|
| End bp | 3863736 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637922121 |
|---|
| Product | branched-chain amino acid aminotransferase I |
|---|
| Protein accession | YP_528493 |
|---|
| Protein GI | 90022666 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1714] Predicted membrane protein/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000160975 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACC CAATAGAAGA AAATATACAC ACAGCAAGTG GCGCTCAGCC AACTGTTCGC
TTTATCGGCT TTTGGCTGCG AGTATTAGCC CACGTAATTG ATTCGCTACT TGTAATAGCC
GCAACCTTGC CGCCACTTCT AATGATTTAC GGCAACAGCT ATTTAATTGG TGCCCATACG
TGGGGGGTGT GGAACATTCT TATTGGCTAT GTTCTGCCTA TAGCCGCAGT GATAGTTTTT
TGGCGCTATA AATCTGCCAC ACCGGGCAAA ATGGTTATTG GGGCACAGGT AGTGGATGAA
AAAACCGGCC TCGCCCCCAG CTACGGGCAA TGCGTTATTC GCTACGTGGG GTATATAGTT
TCTTTTGTTG GCTTGTGCTT AGGGTTTATT TGGGTGGCGT TCGATAAGAA AAAGCGCGCA
TGGCATGATT TAATGGCAGG GACAGTTGTT ATAAGTAAGA AGAGCAAGAC CTTAGCGGAT
AAAAGTAAAA AGCACCAAGA GTAG
|
|---|
| Protein sequence | MDNPIEENIH TASGAQPTVR FIGFWLRVLA HVIDSLLVIA ATLPPLLMIY GNSYLIGAHT
WGVWNILIGY VLPIAAVIVF WRYKSATPGK MVIGAQVVDE KTGLAPSYGQ CVIRYVGYIV
SFVGLCLGFI WVAFDKKKRA WHDLMAGTVV ISKKSKTLAD KSKKHQE
|
|---|
| |