| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2975 |
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| Symbol | |
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| ID | 3967814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3778928 |
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| End bp | 3780178 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922072 |
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| Product | branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein |
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| Protein accession | YP_528444 |
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| Protein GI | 90022617 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.13601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCA CACAATTAGC TAGCAGTTTA ACGCGCTTCG AATCCCGACG AGGTCTCCTA
AAGATTGTTG GGATGAGCGC TTTTTTATTT GGTATGCATT CGGCACTGGC CGATGAGGCA
AATACCACAG GGCTTGCCGT TACTAAAGAT ACGGTCAAAG TCGGGATCTT ACATTCGTTA
ACCGGCACCA TGGCAATCAG TGAGACCGGC GCGCAAGAGG CTGAGAAGCT TGCAATAAAA
CAAATTAACG ATATGGGTGG CATCTTAGGA AGAAAGATCG AGATTATCCA AGAGGATGGC
GCCAGTGATT GGCCAACCTT TGCCGAGAAA TCTAGAAAGC TACTAGTAAA AGATAAGGTA
GCTGCTGTAT TCGGTTGCTG GACATCCGCA TCGCGCAAAG CGGCACTGCC AGTGTTTGAA
AAAGAAAATG GGTTGCTGTA CTACCCAACG TTTTACGAAG GGTTAGAGCA ATCTAAAAAC
GTGATTTATA CGGGCCAAGA GGCAACCCAA CAAATTTTAG ATGGTTTGAA CTGGGTAGCG
AAAGAGAAAA ATGCGAAAAC GTTTTATCTC ATCGGTTCGG ATTACATCTG GCCGCGCACA
TCAATGAAAA TTGCACGCAA ACATATAGAA AATGTGTTGG GCGGCAAAGT TGTTGGTGAA
GAATATAAGC CATTAGGTAA TACGCAGTTC GGCTCGGTTA TCAACAAAAT TCGCCTGAAA
AAACCAGATG TTATTTACGC TGCAGTGGTT GGGGGCAGTA ACGTTGCATG GTTTAAGCAA
TTAAAAGCTG CGGGCATTAC TGGCGAAAAG CAAACCCTAT TAACTATTTC TGTAACCGAA
GATGAAGTGT TGGGTATTGG CGGTGAAAAC TTAGAAGGCT TCTACTCCAT CATGAAGTAC
TTTCAAAGCC AAGATAACCC CAACAACAAA GCCTTTGTGT CTGCCTTTAA AGAAATGTGG
GGTGACGACA GTGTAATTGG TGACGTAACG CAGGCAGCTT ATCTCGGCCC ATGGTTATGG
AAGGCCGCTG TAGAAAAAGC AGGCTCCTTC GATGTAGATA AAGTTGTAGC GGCATCAGAA
AGTGGTGAAA TTGAATTAAC CACCGCGCCA GAAGGTTATG TGAAGTTGCA CAAAAACCAT
CACTTGTGGA GTAAAGCCCG CGTAGGTGTT TGGAACAAAG ATGGTCAAGC AACGGTAGTG
TACGAATCTG ACCTTATCGA ACCAGACCCA TTCCCAGCCG GTTATCAGTA A
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| Protein sequence | MKLTQLASSL TRFESRRGLL KIVGMSAFLF GMHSALADEA NTTGLAVTKD TVKVGILHSL
TGTMAISETG AQEAEKLAIK QINDMGGILG RKIEIIQEDG ASDWPTFAEK SRKLLVKDKV
AAVFGCWTSA SRKAALPVFE KENGLLYYPT FYEGLEQSKN VIYTGQEATQ QILDGLNWVA
KEKNAKTFYL IGSDYIWPRT SMKIARKHIE NVLGGKVVGE EYKPLGNTQF GSVINKIRLK
KPDVIYAAVV GGSNVAWFKQ LKAAGITGEK QTLLTISVTE DEVLGIGGEN LEGFYSIMKY
FQSQDNPNNK AFVSAFKEMW GDDSVIGDVT QAAYLGPWLW KAAVEKAGSF DVDKVVAASE
SGEIELTTAP EGYVKLHKNH HLWSKARVGV WNKDGQATVV YESDLIEPDP FPAGYQ
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