Gene Sde_2887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2887 
Symbol 
ID3968113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3659982 
End bp3661409 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content44% 
IMG OID637921984 
Productprolyl 4-hydroxylase, alpha subunit 
Protein accessionYP_528356 
Protein GI90022529 
COG category[I] Lipid transport and metabolism
[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
[COG3239] Fatty acid desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0125851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00158698 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAACC CGAGCGAATA TATTATTGAA GAGCAGTGGT TTAACGCCGA GCTACCACGG 
CAAGAATTTA GGCAATTTAT GCAAAGAAAT AACTATAGGG GCCTGCTAGA TACAGCACTA
TGGTTTACCT GCTTAGCCTT GAGCGGATAT TTAGCCTACA CATTGTTAGG CACTTATTGG
GCAATACCCG CGTTTTTTGT TTACGGGGTG TTTTATTGTG CTTGCGATGC GCGCTGGCAT
GAGAGCAGCC ACGGCACGGT TTTCCATACA GCATGGCTTA ATACAGCGCT GTGCTTTATA
GCAACCGCTA TGCAGCAGCG GGATATTATT TTTACCCACT GGTCACATGT GCGCCATCAC
TCTTATACAT TAATTAATGA TATAGACCCA GAAATAACAG TTACCCGCCC GCCCACATTT
TGGGAGCACT TTTTAAATTT TTGGAGCCTA GGCGAAGCTA AATACTATAT ACCTATTCTC
TTTCAGCATG CATTTGGCAT TGTAAGTAAA GATGCAAAGA AGTTTGTACC CAAAGAGGAG
TACACCAAAA TGTTTTGGTG GGCCCGCGCA AGCCTATTGG TAAACCTTAT CCCCATAGCA
CTGTGTTTCT ACTTACATAG CGTAGTGCCA ATTTTATTTT TTGGTTTACC TAAAATATAT
GGCAACTTAA TTCAGCGCGC ATTTATTTTG GCGCAACATG CAGGGCTAGA TGACGACACA
TGGGATCATC GCCGCAATTC GCGCACTATA AAGGTTAACC CACTACTTGG GTTTCTTTAT
ATGAATATGC AGTACCACAC CGAGCACCAT ATGAACCCAT TAATGCCGTT TCACCAATTG
CCTAAGTTTT CGAAACGCAT TGCAGACCAA ATGCCCAAGC CCTACAACGG ACTGATTGCG
GTGTACAAAG AAATGCTACC AGCACTGCGC AAACAAGCCA AAGACCCAAC TTATTTTGTA
GAGCGCGAAC TACCCACCGC CAAACAAGAA CGAAAAGTAA AGCGTATTAA ACCGTTAGAG
CCCGATGCAG TAATGGTTCC CATGGCGGCG AAAAAGCAAA CATCTGGCCA AACAGACGTT
ATTGCAAGCG ATAGCCCCCT TGCCGAAAAC ATACAATGGC ATAAAGCAAT AGTAGCGCAT
GAGCTAGGCG AAAATGATGC CGTAAAAGTT TGCATTAACG GGAATCACTA CGCTATTTAC
CAATTACAAC ATGGCAGCTA TCACGCCACC GATGGTATTT GCAGCCACGA ACACGCATTC
CTCGCCGACG GGCTAGTAGA CGATGGCAAA GTGCTGTGCC CGAAGCACAA TTCAAAGTTT
TGCATTAAAA CGGGAAAGGC AATGAACAGA CCGGCTAAGC AGCCAATTAA CGTTTACCCC
ATTAAAAAAG AAGGCGATGA CTTGCTAATT GGTTTAAGTA TTCAATAG
 
Protein sequence
MINPSEYIIE EQWFNAELPR QEFRQFMQRN NYRGLLDTAL WFTCLALSGY LAYTLLGTYW 
AIPAFFVYGV FYCACDARWH ESSHGTVFHT AWLNTALCFI ATAMQQRDII FTHWSHVRHH
SYTLINDIDP EITVTRPPTF WEHFLNFWSL GEAKYYIPIL FQHAFGIVSK DAKKFVPKEE
YTKMFWWARA SLLVNLIPIA LCFYLHSVVP ILFFGLPKIY GNLIQRAFIL AQHAGLDDDT
WDHRRNSRTI KVNPLLGFLY MNMQYHTEHH MNPLMPFHQL PKFSKRIADQ MPKPYNGLIA
VYKEMLPALR KQAKDPTYFV ERELPTAKQE RKVKRIKPLE PDAVMVPMAA KKQTSGQTDV
IASDSPLAEN IQWHKAIVAH ELGENDAVKV CINGNHYAIY QLQHGSYHAT DGICSHEHAF
LADGLVDDGK VLCPKHNSKF CIKTGKAMNR PAKQPINVYP IKKEGDDLLI GLSIQ