Gene Sde_2843 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2843 
Symbol 
ID3968187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3592886 
End bp3595723 
Gene Length2838 bp 
Protein Length945 aa 
Translation table11 
GC content49% 
IMG OID637921940 
Productextracellular nuclease-like 
Protein accessionYP_528312 
Protein GI90022485 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0894144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.737872 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA CATTAATGGC GTTATTGCTG GGGCTCACGC CTTTGGCAAC ACAAGCCAAC 
GTAATAATTA CTGCTGTATA CGATGGGCCG ATTACCGGTG GCGTACCCAA AGGGGTAGAG
CTATATGTAG CGGACGATGT AGCCGATTTA AGTGTGTACG GTTTGGGTAG CGCCAGTAAC
GGCGGCGGTA CCGATGGTGA GGAGTTTACC TTCCCCGCTG TAAGCGTAAG CGCTGGTGAG
TACCTCTACG TTGCCAGCGA AGCTGTGCAA TTTGAAGCGT TTTTTGGCTT CGCCCCCCAT
TACACAAGCT CTGCTATGAG CATTAACGGT GATGATGCAA TTGAATTGTT TCAGCACGGC
GCCTTGTACG ATGTTTTTGG TGTGCAAACA CAGGATGGAA CAGGTACCGA ATGGGATTAT
TTAGACGGTT GGGCCTATCG TGTAACAGGT AGTGAGCCAT CTACAGCATT TAATGCTGCT
GAATGGATAT TCAGTACTCC AAATGCATGG GATGGCGAAA CAACTAATGC CACTGCTGCA
GTGCCTTTGC CAATGCAGCA GTTTGCTACG GGCAGCAATG GCGGTGGCGA AGGAGAGGGC
GGCGACGGTG ACGGCGAAAC GCCAGTCATT GAAACCGTAT TTATCTCTTC TATACAAGGT
AACCCAAGTA CTTATATTTC CAACCAGTTC GGCGAGCAGG ATGTAAGCCC GTTGAACGGC
ACAGTTGTAC ACGTTGAAGC GGTAGTTGTT GGCGACTTTC AAAATAACGA TGCCGATACC
GCGCGCAATC TTGGCGGCTT TTATTTACAG GAAGAGGCTG GCGACGAAGA CGGCAATGCC
TTGTCATCTG AGGGCGTGTT TGTTTACGAG GGTAATACGT CTTTAGCTGA TGTAAATGTG
GGCGATCTAG TAAAAGTGGT TGCTACGGTG GGGCAGTACT ACGGTGAAAC CCAATTAACG
AATGTGCAAT CCATCGAAAT ACTTGCCCAG CAACAGTTGG ATTTAGTCAA TGTTGCTCAG
GTGTCGCTGT TAGGCAATAG CAATGTAACA ATCAATCAAG ATGGTCGCTA TCAGCCCAAC
TTAGAAGCCT ACGAAGGTAT GCTGGTTACG CTAGTGGATA CTGTGCAAAT AACCGAGCAG
TATCAGCTAG ACCGCTTTAA CGAAATTCGT GTGGCGGCGG GCGAGCGCCC AGTGCAATTT
AGCCAGCTAA ATACGCCAGA TGCCACTCTG TACGATGTGT GGTTGCAAGA GCAAGGTGCA
CGCTCAATGG TGTATGACGA CGGTTTAAAT AGCCAAAACG AGAGCATAGA CTTATTAGAT
GGCTTCGCCC CATATACAAC CGCAACTGCA CCAAGAATGG GTGATACGGC AAATAATTTA
ACTGGGGTGT TGGATTACAA GTGGGCCGGT AATGCCTCAT CTGGCGCGAC TTGGAGACTG
CGTTCGCATA GCGATGGCAC CAACCATTTT GAGCGAAGTA ACCCTCGACC AACCGCCGCG
CCTAGTATTG ACGGCAATTT AAAAATCACG TCTTTTAACG TGCTTAATTT CTTCGCAACT
ATCGATGAAA GCGGTGTGGT TACAATGGCA GGGCACGACC CGCGCGGTGC AGATTCAATT
GCAGAACGCG ATCGTCAGCT AGCAAAATTA ACCCAGGCAA TTTTAGCAAT GGATGCCGAT
GTTGTGGGTT TGGTTGAGCT GGAAAATGAG TTCGATAATG TGAACGACGG TTCCACTGCA
ATTGAAATGC TAGTGAATAG CGTGAACGCA GTTGCGGGTG AAACTCTGTA CGACTATGCA
TTCCCAGGCT CTTCGTTTGT AGGCACAGAT GCCATTGCCG TGGGGGTGAT CTATAAGCCT
GCGGTTGTGC AATTGGCCGA GGGTACAGTG CCTGCGCTGC TGGAAGACAG TGTTGCGCAA
ACCTTGCCTT TATTTGCCGG CCGCGATTTT GCCACTAACC CATTGTTTAA CGGTGTGGCT
ACCAATAGAG TATCGCTGGC GGTTAGCTTT ACTCATTTAG AAAGTAAAGA AAGCTTTACC
GTGGTAGCTA ACCATTTTAA ATCTAAAGGC AGTTCGGGCT TAACTGATAG CAGCGATGCT
AACTTCGATA AAAATGATGG CGCCGGCTTC TGGAATCAGC GCCGTTTGGA GGCTGCGCAA
GCGGTGATTG CTTGGTTGCA AACTTCTCCC ACAGGCTTGG TCGACAGCGA TCAAATAATA
TTGGGCGACT TAAACGCTTA TGCTGCAGAG GAGCCCATTC AATACCTGTT GGCAGAAGGC
TTTAATAATG TGGAATCTGA GCATGCATAC TCCTACGTAT TCGATGGTCA AGTAGGCACC
TTAGATTACT TGTTAGTGAG CGATAGTTTA TTTGAAAAAC TCACCGCTGC GCAGGTTTGG
AATGTGAACG CCGACGAAGC CGATGCAATA GATTACAACT TGGATTACGG CCGCAGCGCG
AGCTATTTTG ACGCTAGTGT TGCTGCTCGC AACTCCGACC ACGACCCCGT GCTAGTGGGC
TTTGAATTAA CTAAAGCCGC CTTCACACTA CCGGAATTGG CTGCGTTCTT TTTACAGGAA
GTTCGCGCAG GCAATATTTC ACCTATGCAC CCACGCAAGT GGTTTAGCTG GTTTTCGGTG
TATTCTATTC AGAGTTCGCT GAACTACGCC GTACGCATGA ACGAGCTGGG GCGCACTCAA
GTGGCATGCC ATATGCTAGC GCGCGTAGAT GCAGTTACCG ATAACCAAAC TCGCCCACGA
GATTGGGTTA AAGGTGAAAG TGTGAGCGAG TTCAACCAAA AGCTGCACGC TACTTTAGAG
CCGTTGTCTT GTAACTAA
 
Protein sequence
MKKTLMALLL GLTPLATQAN VIITAVYDGP ITGGVPKGVE LYVADDVADL SVYGLGSASN 
GGGTDGEEFT FPAVSVSAGE YLYVASEAVQ FEAFFGFAPH YTSSAMSING DDAIELFQHG
ALYDVFGVQT QDGTGTEWDY LDGWAYRVTG SEPSTAFNAA EWIFSTPNAW DGETTNATAA
VPLPMQQFAT GSNGGGEGEG GDGDGETPVI ETVFISSIQG NPSTYISNQF GEQDVSPLNG
TVVHVEAVVV GDFQNNDADT ARNLGGFYLQ EEAGDEDGNA LSSEGVFVYE GNTSLADVNV
GDLVKVVATV GQYYGETQLT NVQSIEILAQ QQLDLVNVAQ VSLLGNSNVT INQDGRYQPN
LEAYEGMLVT LVDTVQITEQ YQLDRFNEIR VAAGERPVQF SQLNTPDATL YDVWLQEQGA
RSMVYDDGLN SQNESIDLLD GFAPYTTATA PRMGDTANNL TGVLDYKWAG NASSGATWRL
RSHSDGTNHF ERSNPRPTAA PSIDGNLKIT SFNVLNFFAT IDESGVVTMA GHDPRGADSI
AERDRQLAKL TQAILAMDAD VVGLVELENE FDNVNDGSTA IEMLVNSVNA VAGETLYDYA
FPGSSFVGTD AIAVGVIYKP AVVQLAEGTV PALLEDSVAQ TLPLFAGRDF ATNPLFNGVA
TNRVSLAVSF THLESKESFT VVANHFKSKG SSGLTDSSDA NFDKNDGAGF WNQRRLEAAQ
AVIAWLQTSP TGLVDSDQII LGDLNAYAAE EPIQYLLAEG FNNVESEHAY SYVFDGQVGT
LDYLLVSDSL FEKLTAAQVW NVNADEADAI DYNLDYGRSA SYFDASVAAR NSDHDPVLVG
FELTKAAFTL PELAAFFLQE VRAGNISPMH PRKWFSWFSV YSIQSSLNYA VRMNELGRTQ
VACHMLARVD AVTDNQTRPR DWVKGESVSE FNQKLHATLE PLSCN