Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2843 |
Symbol | |
ID | 3968187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3592886 |
End bp | 3595723 |
Gene Length | 2838 bp |
Protein Length | 945 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637921940 |
Product | extracellular nuclease-like |
Protein accession | YP_528312 |
Protein GI | 90022485 |
COG category | [R] General function prediction only |
COG ID | [COG2374] Predicted extracellular nuclease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0894144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.737872 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA CATTAATGGC GTTATTGCTG GGGCTCACGC CTTTGGCAAC ACAAGCCAAC GTAATAATTA CTGCTGTATA CGATGGGCCG ATTACCGGTG GCGTACCCAA AGGGGTAGAG CTATATGTAG CGGACGATGT AGCCGATTTA AGTGTGTACG GTTTGGGTAG CGCCAGTAAC GGCGGCGGTA CCGATGGTGA GGAGTTTACC TTCCCCGCTG TAAGCGTAAG CGCTGGTGAG TACCTCTACG TTGCCAGCGA AGCTGTGCAA TTTGAAGCGT TTTTTGGCTT CGCCCCCCAT TACACAAGCT CTGCTATGAG CATTAACGGT GATGATGCAA TTGAATTGTT TCAGCACGGC GCCTTGTACG ATGTTTTTGG TGTGCAAACA CAGGATGGAA CAGGTACCGA ATGGGATTAT TTAGACGGTT GGGCCTATCG TGTAACAGGT AGTGAGCCAT CTACAGCATT TAATGCTGCT GAATGGATAT TCAGTACTCC AAATGCATGG GATGGCGAAA CAACTAATGC CACTGCTGCA GTGCCTTTGC CAATGCAGCA GTTTGCTACG GGCAGCAATG GCGGTGGCGA AGGAGAGGGC GGCGACGGTG ACGGCGAAAC GCCAGTCATT GAAACCGTAT TTATCTCTTC TATACAAGGT AACCCAAGTA CTTATATTTC CAACCAGTTC GGCGAGCAGG ATGTAAGCCC GTTGAACGGC ACAGTTGTAC ACGTTGAAGC GGTAGTTGTT GGCGACTTTC AAAATAACGA TGCCGATACC GCGCGCAATC TTGGCGGCTT TTATTTACAG GAAGAGGCTG GCGACGAAGA CGGCAATGCC TTGTCATCTG AGGGCGTGTT TGTTTACGAG GGTAATACGT CTTTAGCTGA TGTAAATGTG GGCGATCTAG TAAAAGTGGT TGCTACGGTG GGGCAGTACT ACGGTGAAAC CCAATTAACG AATGTGCAAT CCATCGAAAT ACTTGCCCAG CAACAGTTGG ATTTAGTCAA TGTTGCTCAG GTGTCGCTGT TAGGCAATAG CAATGTAACA ATCAATCAAG ATGGTCGCTA TCAGCCCAAC TTAGAAGCCT ACGAAGGTAT GCTGGTTACG CTAGTGGATA CTGTGCAAAT AACCGAGCAG TATCAGCTAG ACCGCTTTAA CGAAATTCGT GTGGCGGCGG GCGAGCGCCC AGTGCAATTT AGCCAGCTAA ATACGCCAGA TGCCACTCTG TACGATGTGT GGTTGCAAGA GCAAGGTGCA CGCTCAATGG TGTATGACGA CGGTTTAAAT AGCCAAAACG AGAGCATAGA CTTATTAGAT GGCTTCGCCC CATATACAAC CGCAACTGCA CCAAGAATGG GTGATACGGC AAATAATTTA ACTGGGGTGT TGGATTACAA GTGGGCCGGT AATGCCTCAT CTGGCGCGAC TTGGAGACTG CGTTCGCATA GCGATGGCAC CAACCATTTT GAGCGAAGTA ACCCTCGACC AACCGCCGCG CCTAGTATTG ACGGCAATTT AAAAATCACG TCTTTTAACG TGCTTAATTT CTTCGCAACT ATCGATGAAA GCGGTGTGGT TACAATGGCA GGGCACGACC CGCGCGGTGC AGATTCAATT GCAGAACGCG ATCGTCAGCT AGCAAAATTA ACCCAGGCAA TTTTAGCAAT GGATGCCGAT GTTGTGGGTT TGGTTGAGCT GGAAAATGAG TTCGATAATG TGAACGACGG TTCCACTGCA ATTGAAATGC TAGTGAATAG CGTGAACGCA GTTGCGGGTG AAACTCTGTA CGACTATGCA TTCCCAGGCT CTTCGTTTGT AGGCACAGAT GCCATTGCCG TGGGGGTGAT CTATAAGCCT GCGGTTGTGC AATTGGCCGA GGGTACAGTG CCTGCGCTGC TGGAAGACAG TGTTGCGCAA ACCTTGCCTT TATTTGCCGG CCGCGATTTT GCCACTAACC CATTGTTTAA CGGTGTGGCT ACCAATAGAG TATCGCTGGC GGTTAGCTTT ACTCATTTAG AAAGTAAAGA AAGCTTTACC GTGGTAGCTA ACCATTTTAA ATCTAAAGGC AGTTCGGGCT TAACTGATAG CAGCGATGCT AACTTCGATA AAAATGATGG CGCCGGCTTC TGGAATCAGC GCCGTTTGGA GGCTGCGCAA GCGGTGATTG CTTGGTTGCA AACTTCTCCC ACAGGCTTGG TCGACAGCGA TCAAATAATA TTGGGCGACT TAAACGCTTA TGCTGCAGAG GAGCCCATTC AATACCTGTT GGCAGAAGGC TTTAATAATG TGGAATCTGA GCATGCATAC TCCTACGTAT TCGATGGTCA AGTAGGCACC TTAGATTACT TGTTAGTGAG CGATAGTTTA TTTGAAAAAC TCACCGCTGC GCAGGTTTGG AATGTGAACG CCGACGAAGC CGATGCAATA GATTACAACT TGGATTACGG CCGCAGCGCG AGCTATTTTG ACGCTAGTGT TGCTGCTCGC AACTCCGACC ACGACCCCGT GCTAGTGGGC TTTGAATTAA CTAAAGCCGC CTTCACACTA CCGGAATTGG CTGCGTTCTT TTTACAGGAA GTTCGCGCAG GCAATATTTC ACCTATGCAC CCACGCAAGT GGTTTAGCTG GTTTTCGGTG TATTCTATTC AGAGTTCGCT GAACTACGCC GTACGCATGA ACGAGCTGGG GCGCACTCAA GTGGCATGCC ATATGCTAGC GCGCGTAGAT GCAGTTACCG ATAACCAAAC TCGCCCACGA GATTGGGTTA AAGGTGAAAG TGTGAGCGAG TTCAACCAAA AGCTGCACGC TACTTTAGAG CCGTTGTCTT GTAACTAA
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Protein sequence | MKKTLMALLL GLTPLATQAN VIITAVYDGP ITGGVPKGVE LYVADDVADL SVYGLGSASN GGGTDGEEFT FPAVSVSAGE YLYVASEAVQ FEAFFGFAPH YTSSAMSING DDAIELFQHG ALYDVFGVQT QDGTGTEWDY LDGWAYRVTG SEPSTAFNAA EWIFSTPNAW DGETTNATAA VPLPMQQFAT GSNGGGEGEG GDGDGETPVI ETVFISSIQG NPSTYISNQF GEQDVSPLNG TVVHVEAVVV GDFQNNDADT ARNLGGFYLQ EEAGDEDGNA LSSEGVFVYE GNTSLADVNV GDLVKVVATV GQYYGETQLT NVQSIEILAQ QQLDLVNVAQ VSLLGNSNVT INQDGRYQPN LEAYEGMLVT LVDTVQITEQ YQLDRFNEIR VAAGERPVQF SQLNTPDATL YDVWLQEQGA RSMVYDDGLN SQNESIDLLD GFAPYTTATA PRMGDTANNL TGVLDYKWAG NASSGATWRL RSHSDGTNHF ERSNPRPTAA PSIDGNLKIT SFNVLNFFAT IDESGVVTMA GHDPRGADSI AERDRQLAKL TQAILAMDAD VVGLVELENE FDNVNDGSTA IEMLVNSVNA VAGETLYDYA FPGSSFVGTD AIAVGVIYKP AVVQLAEGTV PALLEDSVAQ TLPLFAGRDF ATNPLFNGVA TNRVSLAVSF THLESKESFT VVANHFKSKG SSGLTDSSDA NFDKNDGAGF WNQRRLEAAQ AVIAWLQTSP TGLVDSDQII LGDLNAYAAE EPIQYLLAEG FNNVESEHAY SYVFDGQVGT LDYLLVSDSL FEKLTAAQVW NVNADEADAI DYNLDYGRSA SYFDASVAAR NSDHDPVLVG FELTKAAFTL PELAAFFLQE VRAGNISPMH PRKWFSWFSV YSIQSSLNYA VRMNELGRTQ VACHMLARVD AVTDNQTRPR DWVKGESVSE FNQKLHATLE PLSCN
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