| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2827 |
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| Symbol | |
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| ID | 3968230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3564704 |
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| End bp | 3566656 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921924 |
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| Product | arabinogalactan endo-1,4-beta-galactosidase |
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| Protein accession | YP_528296 |
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| Protein GI | 90022469 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000000305574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00171331 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGACAA AAATAATCCA GCTATTTCTA CTTGCCTTAA CGTGCAGTTT TATGGCGAGT
TGTGGCGGTG CCAGTGACAG CAACCCGCCA CCGGTGACTG AGCCAGAACC CCAGCCTGAA
CAAGAACCAG AGCAGGAGCC AGAAGCTGAA CCAGAAGCGG AGCCTGTTGC ATTCTATTTC
GGTAACGACC TTTCCTACGT AAACGAAATG GAAGACTGCG GCGCAGTGTA TAAAGATGCA
GGCAGTGTAG TAGACCCCTA CGAAGTGATC GCCAATCACG GCGGCAACCT TGTGCGCGTG
CGTCACTGGA ACGACCCCTA CTGGCAGGCG CTTATTACCC AGCCAGAATC TGTAGCGGCA
AATTGGAAAG CTAATTACAG TGGGCTTGAA GATGTAACAG AAACAATTCG ACGATCAAAA
GCCGCCGGTA TGGAAGTGCT GCTCGACTTT CATTTCTCAG ATATTTGGGC AGACCCCGGC
AGGCAAACAA CGCCGCGCGC ATGGGAAAAT GACTTTGGCG ATGAAGACGC CATGGCTGCG
CATATATACG ATTACGTAAC ATCAGTACTC ACAGGGTTAA ACGACGAAGG TTTAATGCCC
GAGCTTATTC AAATTGGTAA CGAATCTAAC TCCGGCATGA TGACGACTCA AAACCTCATT
ATAGAAATGA ATGATGCGGG TACGGGGTTA AATGTGAGTA AAGGCGGGCA AACAAATTAC
TCAGATCAAT ATGTTGCGCG TATGTATAAC TCTGCGATTT CTGCTGTGCG CGATATTAGT
GAAGGGATGA CCAACGCTCC GCGTATTGCT ATCCACGTGG CAGGTGCAGA TAAAGCCGTC
GCATTTTTTG ATAAGTTAAA AAGCATCGGA GTAACGGATA TTGATATCGC GGGCTTCTCG
TTTTATTACG GTTGGGAGCA AGCACCAATA GAAGACGTTG CAAGCATGAT TGCAACCTTA
AAGGAACGTC ACCCTAATTT AGACCCGTTA ATGCTTGAAA CAGGCTACCT GTGGGATGAA
GAAAACATCG ATAGCTTAGG CAATATTATT GGCATTGCCG ACCCCGCATA TTTACCTGTG
AGCAAACAGA ACCAACTTAA ATATCTTACC GATTTATCGC AAGCGGTTGC TGATGCTGGT
GGTATTGGAG TGGTGTTTTG GGAGCCATCT TGGGTATCAA CCGAATGTCG CACACCTTGG
GGGCAGGGCT CATCTCACGA GCATGTTGCT TACTTCGATC ACCGCGACGG CTTAAACTTT
CATATTGGTG GCCAATGGAT GGAGGTTACC AAGTTAAGCG AAACCCCAGA AGCGGGGCTA
GCTACTACCT TTAGAGTGGA TATGACTGGC CAAGACACCA GCGCAGGGGT ATTTATTCGC
GGGGCGTTTA CCGAAGACAC ATTGCAGCCC ATGCTATATG AAGGCGAAAA CATTTATAGT
TACACCACGC ATATCCAAGC AGCGCAAAGC GGAAGCTACC ACTATGCGAT TGGCTTAAAA
AATGGTACGC GCGAAACGGT TCCTAGCGAA TGTGCAAACC CAGAAGATAC GTTAAATCGT
TTATATACGG TGGGCGAAAA TGGGGAGCAG TTAGTTACCG CAGTTTGGGC AAGCTGTGAT
GTTTTCGATC CGCAAGCGGC TGGGCCAACA ACCTTAACGC TTAATGTAGA TATGACTGGT
GTAGATGTAA GTGGTGGTGT GTATGTTGCA GGCGACTTAA ATGCTTGGAC AATCACCGAG
CTTACACAAG TTGGCGCTAG CGCAATTTAT ACCATTAGTT ACGATTTAGC CGTAGGTGCA
GAAGGTGGCT ACTACTTCTT GAATGGCAGC GATTGGGGCG ATAGGGAAAC AATACCAGAA
GAATGTGTGG GCTACTATGA TGCAGACCGC GGCTTTTTGG TGGAAGAGCA AAGCCCACAG
GTATTGGATT TAGTGTGGAG TAGTTGTCAA TAA
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| Protein sequence | MKTKIIQLFL LALTCSFMAS CGGASDSNPP PVTEPEPQPE QEPEQEPEAE PEAEPVAFYF
GNDLSYVNEM EDCGAVYKDA GSVVDPYEVI ANHGGNLVRV RHWNDPYWQA LITQPESVAA
NWKANYSGLE DVTETIRRSK AAGMEVLLDF HFSDIWADPG RQTTPRAWEN DFGDEDAMAA
HIYDYVTSVL TGLNDEGLMP ELIQIGNESN SGMMTTQNLI IEMNDAGTGL NVSKGGQTNY
SDQYVARMYN SAISAVRDIS EGMTNAPRIA IHVAGADKAV AFFDKLKSIG VTDIDIAGFS
FYYGWEQAPI EDVASMIATL KERHPNLDPL MLETGYLWDE ENIDSLGNII GIADPAYLPV
SKQNQLKYLT DLSQAVADAG GIGVVFWEPS WVSTECRTPW GQGSSHEHVA YFDHRDGLNF
HIGGQWMEVT KLSETPEAGL ATTFRVDMTG QDTSAGVFIR GAFTEDTLQP MLYEGENIYS
YTTHIQAAQS GSYHYAIGLK NGTRETVPSE CANPEDTLNR LYTVGENGEQ LVTAVWASCD
VFDPQAAGPT TLTLNVDMTG VDVSGGVYVA GDLNAWTITE LTQVGASAIY TISYDLAVGA
EGGYYFLNGS DWGDRETIPE ECVGYYDADR GFLVEEQSPQ VLDLVWSSCQ
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