| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2811 |
|---|
| Symbol | |
|---|
| ID | 3968214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3547392 |
|---|
| End bp | 3549008 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637921908 |
|---|
| Product | alkyl hydroperoxide reductase, F subunit |
|---|
| Protein accession | YP_528280 |
|---|
| Protein GI | 90022453 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
|---|
| TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000304525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGATC AAACTTTAAT TAACCAGCTC AAGCAGTACG TTCAACATAT TAAACGCCCA
GTTGAGTTGG TACTAACACT AAATAGTTCC GACAAAAGCG AAGAACTACA AGCATTAGGT
GAACAACTGG CAAGCTTGAG CGATTTAATT TCACTGCAAA TAGATGCGGC AAGCAGCAAA
CGCAGCCCAA CGTTACTGGT GCGCTCGCCA GATACAAAAA GTGAAATACG CTTTAGTGGC
ATTCCGCTAG GACACGAATT TACCTCGCTG GTACTTGCGT TATTGCACAC AGGTGGACAC
GACACCAAAC AAGAGCAGGC CATACTAGAC CAAATTAAAA CACTAGAATT GCCGAAAGGG
GCTGAATACT TTGAATTTGA AACGTACATA TCTCTTAGCT GCCAAAATTG CCCAGAGGTA
GTACAAGCGT TAAATATTTT GGCGGCAATT AACCCGCAAA TTAAACACAC AATGATAGAC
GGCGCGCTGT TCGAGCAAGA AGTAAGCGAG CGCAAAGTAA TGGCCGTACC CAGTGTATTT
TTAAACGGCA AGTTATTTGG CCAAGGCCGC ATGAACATTA GCCAAATACT CGCTAAGTTA
GATAGCGGCT CGGCAGAGAA ACAAAAAAAC GCGTTAAACG AAAAACCTAA TTTCGACATG
CTTATAGTCG GTGGCGGCCC CGCAGGTGCA TCTGCAGCGA TTTATGCCGC GCGCAAAGGC
ATTAAAACCG GTATTGCCGC CGAACGCTTT GGCGGGCAAG TAGCCGATAC ATTAGCCATT
GAAAACTTTA TTTCGGTAAA AGCCACAGAG GGCCCGAAGT TAGTTTCAAG CTTAGAAAGC
CACGTACGCG ATTACGATGT AGATATAATG CAAGGCCAAC AAGCCGCAAA ACTCACCCCC
GCAAGCGAAT CGCAATCTGG CTTAGTTGAA ATAACACTTA CCAACGGCGC GGTATTAAAA
AGCCGATCCG TATTACTCGC TACCGGTGCA CGCTGGCGCG AATTGGGAGT GCCAGGTGAA
CAGGAATACC GAGGCAAGGG CGTGGCTTAC TGCCCACACT GCGACGGCCC TTTATTTAAA
GGTAAACCAG TAGCGGTAAT TGGCGGGGGC AACTCAGGCG TAGAAGCCGC TATCGATTTA
GCCGGTATTA CTTCGCACGT AACACTGCTT GAATTTGGTG AAACTTTGCG AGCAGATGAT
GTGCTTGTAC GAAAACTAAA ATCGCTGCCT AATGTAAAAA TTATCACCTC GGCGCAAACC
ACAGAGGTAC ACGGCGACGG CGAAAAAGTA ACAGGCTTGC GCTACACCAA CCGCGAAACC
AATATTGAAC ACTCTGTTGC ACTTGCAGGG GTATTTGTAC AAATAGGTTT AATACCAAAC
AGCGAATGGC TTGGTGAACC GTCTGGCAAT GCGGTAAAAC GCACACGCTA CGGCGAAATT
GAAACCAACA GCAAAGGCGA AACATCTGTG CCAGGCGTAT TTGCTGCCGG CGATGTAACT
ACTGCACCCT ACAAACAAAT TATTGTAGCT ATGGGCAGCG GCGCCAGTGC AGCGTTAGGC
GCGTTTGATT ATTTAATGCG GCAAGAAACT GATGAGTCGA AATCTGTTGC GGCTTAA
|
|---|
| Protein sequence | MLDQTLINQL KQYVQHIKRP VELVLTLNSS DKSEELQALG EQLASLSDLI SLQIDAASSK
RSPTLLVRSP DTKSEIRFSG IPLGHEFTSL VLALLHTGGH DTKQEQAILD QIKTLELPKG
AEYFEFETYI SLSCQNCPEV VQALNILAAI NPQIKHTMID GALFEQEVSE RKVMAVPSVF
LNGKLFGQGR MNISQILAKL DSGSAEKQKN ALNEKPNFDM LIVGGGPAGA SAAIYAARKG
IKTGIAAERF GGQVADTLAI ENFISVKATE GPKLVSSLES HVRDYDVDIM QGQQAAKLTP
ASESQSGLVE ITLTNGAVLK SRSVLLATGA RWRELGVPGE QEYRGKGVAY CPHCDGPLFK
GKPVAVIGGG NSGVEAAIDL AGITSHVTLL EFGETLRADD VLVRKLKSLP NVKIITSAQT
TEVHGDGEKV TGLRYTNRET NIEHSVALAG VFVQIGLIPN SEWLGEPSGN AVKRTRYGEI
ETNSKGETSV PGVFAAGDVT TAPYKQIIVA MGSGASAALG AFDYLMRQET DESKSVAA
|
|---|
| |