| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2784 |
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| Symbol | |
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| ID | 3968341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3517235 |
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| End bp | 3517918 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921883 |
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| Product | heterocyst specific ABC-transporter, ATP-binding subunit DevA-like |
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| Protein accession | YP_528255 |
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| Protein GI | 90022428 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02982] ABC exporter ATP-binding subunit, DevA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000473881 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCACCCAA TTCAAGTTAA AGAATTGAAT CACTGGTTTG GTCAAGGTGA GGCAAAAAAG
CAGGCATTGT TTGATATCAA TTTAGATATT GAAAAAGGAA AACTGACTAT TCTAATGGGA
CCGTCGGGCT CAGGCAAAAC AACACTGCTT ACCATAATGG GCTGTTTGCG AGACGTGCAG
CAGGGCAGTA TTCAAGTGTT GGGTAATGAG CTATTAGGGC TTGACGATTG GAGCAAAGAA
AATCTACGTC GCAAGTTTGG CTTTATTTTT CAAGCACACA ACCTTCATGA AAGCTTAACC
GCAATTGAAA ATGTCTTGAT GGGTTTAGAA GTACATGGCT TAGGGCAAAA GGATAAGCAG
AACACTGCCG CTAAACACGT GCTCTCACTT TTTGGGCTGG GCGATAGAAT GCATTACCTA
CCAGAAAATT TGTCCGGCGG GCAAAAGCAG CGTGTTGCTA TCGCCCGAGC CTTAGTTTCG
AATCCACAGA TAATATTTGC CGACGAGCCG ACGGCCGCAT TGGACTCAAC ATCTGGAAAA
AACGTGGTGC AAACTTTAAA AGTCCTAGGC GAGCAACGTG GCGTTACAAC AATTATGGTT
ACTCACGACA ACAGAATATT AGAGTATGCC GACAGAATCA TTACCTTAGA AGATGGCCGT
ATCATTTCCG ATAAGTTGGT TTAG
|
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| Protein sequence | MHPIQVKELN HWFGQGEAKK QALFDINLDI EKGKLTILMG PSGSGKTTLL TIMGCLRDVQ
QGSIQVLGNE LLGLDDWSKE NLRRKFGFIF QAHNLHESLT AIENVLMGLE VHGLGQKDKQ
NTAAKHVLSL FGLGDRMHYL PENLSGGQKQ RVAIARALVS NPQIIFADEP TAALDSTSGK
NVVQTLKVLG EQRGVTTIMV THDNRILEYA DRIITLEDGR IISDKLV
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