| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2703 |
|---|
| Symbol | |
|---|
| ID | 3968445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3429336 |
|---|
| End bp | 3430133 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637921801 |
|---|
| Product | putative outer membrane protein |
|---|
| Protein accession | YP_528175 |
|---|
| Protein GI | 90022348 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3713] Outer membrane protein V |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00728631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCGTT ATTGGATAGG TGCGTTGGCA TTGTGCTATG CAGTCAATGC GAGTGCAGTG
TTTGATGGAG AAATGGAATT AGGTATTGGT CTCGGTGGGC AATATATTCA CGACTACCGC
GGTTCGAAAG AAACACAAAT ACAATTTTTA CCTTTTCCAT TTGTTAAGTA TCACGGTGAT
TTTCTTAAAA TAGATCGCAA AGGTGTGGAG GGCGAAATAT ACGCTTCCGA TCGTTTTGAA
TTTAATTTAA GTGCAGATTT AGCGCTTAAT GGCGATAGCC ACGATAACCG TTTACGAGCC
GGTATGCCGG AGCTTGCGAG CGCAGCGCAA ATTGGGCCTT CGTTTAATAT CAACATAACC
GGTAAAAATT TCCACACAGG TTGGGCGGCT CGACTGCCGT TGCGCGGTGT GGTGGCAATA
GATACGTCTA AAGTTGAGTA TATAGGTTAT AACTTTGCCC CCAAACTTAC CTATCAGTGG
CCAAAGTTTT ACGGTGAGTG GGACGCAAAG GCGGATGTAG GCGTAATTTA CGCCTCAGAA
AAATACCACC GTTATTATTA CAGTGTTGAA GATGCATTTG CTACGGTAGA AAGGCCAGCC
TATGCCGCAA CTGCCGGTTA CAGTGGCGCG TTTGTAAAGG TTGGAGCCAA AGCGAGGTAC
GGCAACATTA TTTACGGTAC AAGTATTCGT TACGACAATT TAGAGGGCGT TGTATTTGAA
GGTAGCCCAT TAATGGAAAC AACAAATCAC TGGGTAATAT CTGCTGGTGT GGCGTGGGTT
TTTTATAAGC GAAATTAA
|
|---|
| Protein sequence | MKRYWIGALA LCYAVNASAV FDGEMELGIG LGGQYIHDYR GSKETQIQFL PFPFVKYHGD
FLKIDRKGVE GEIYASDRFE FNLSADLALN GDSHDNRLRA GMPELASAAQ IGPSFNINIT
GKNFHTGWAA RLPLRGVVAI DTSKVEYIGY NFAPKLTYQW PKFYGEWDAK ADVGVIYASE
KYHRYYYSVE DAFATVERPA YAATAGYSGA FVKVGAKARY GNIIYGTSIR YDNLEGVVFE
GSPLMETTNH WVISAGVAWV FYKRN
|
|---|
| |