Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2685 |
Symbol | |
ID | 3968465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3409428 |
End bp | 3410516 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921783 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_528157 |
Protein GI | 90022330 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0391774 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACCT TACATGTAGA CTTGGGGGAT AGGAGCTATC CGATTTTTAT TGGCGCTGGC CTGTTAGCTA ACCCTGAAAA GTTTTTACCT TATTTGGCGG CGAAACAGGT GCTGGTTGTT ACAAATACAA CGATCGATGC GCTGTATGGC GACAGTTTTT TCTCGTTGTT CGAGGGGATG GATAAAGCGC ATAAGGTTGT ATTGCCTGAT GGGGAGTCTT ATAAAAATTT AGAAGCGCTA AACCAAATAT TTGATGCTTT GCTAGAAGGG AAGCACAATC GTAAGACCAC ATTGGTGGCT TTAGGGGGTG GTGTTGTAGG TGATATGACC GGCTTTGCTG CTGCAGCTTA TCAGCGTGGT GTTGGTTTTA TTCAAGTGCC AACCACACTG CTGTCTCAGG TTGACTCTTC TGTGGGGGGG AAGACCGGCG TGAACCATCC GCTTGGCAAG AATATGATTG GTGCTTTCCA TCAGCCGAAT GTGGTGGTTA TTGATACCGA TGTATTAAAA ACATTGCCTG ATAGAGAGCT GTCTGCCGGA ATGGCAGAGG TTATCAAATA TGGTCTTATT GCAGATTATG AATTTTTCTG CTGGTTAGAG TCTAATGTAA AGGCATTGAT GGCAAGGGAT GTTGATGCAC TCGAGTACGC AATTGAGCGG TCTTGCCAAA TTAAAGCCGA TGTTGTTGCT CAAGATGAGA CCGAGTCAGG TATTCGCGCG ATATTGAATC TTGGGCATAC GTTTGGCCAT GCGATTGAGA GTGATCAAGG TTATGGTAAT TGGCTGCATG GTGAAGCGGT GGGCGCCGGT ATGGTGATGG CCTGTGAATT GTCTTGTCGG ATGGGATGGA TAGATAAGCC GTTTTGTGAG CGTGCAGTAG CGCTGATTGC TGCTGCAGGT TTGCCTATTG CGCCGCCGGA ATCGATGTCG CCAGAAGATT TTATGAAGTA CATGGCTGTG GATAAAAAGG TCTTGGATGG TGGTTTGCGC TTGGTGTTAC CAAATAAACC GGGTTCTTCC ATTGTGACCG ATTCATTTGA TGCTGACGCG CTAGCTGCGA CTTTGGGTCG TACTGGGCAG CTGGGTTAG
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Protein sequence | MKTLHVDLGD RSYPIFIGAG LLANPEKFLP YLAAKQVLVV TNTTIDALYG DSFFSLFEGM DKAHKVVLPD GESYKNLEAL NQIFDALLEG KHNRKTTLVA LGGGVVGDMT GFAAAAYQRG VGFIQVPTTL LSQVDSSVGG KTGVNHPLGK NMIGAFHQPN VVVIDTDVLK TLPDRELSAG MAEVIKYGLI ADYEFFCWLE SNVKALMARD VDALEYAIER SCQIKADVVA QDETESGIRA ILNLGHTFGH AIESDQGYGN WLHGEAVGAG MVMACELSCR MGWIDKPFCE RAVALIAAAG LPIAPPESMS PEDFMKYMAV DKKVLDGGLR LVLPNKPGSS IVTDSFDADA LAATLGRTGQ LG
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