| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2681 |
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| Symbol | hemE |
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| ID | 3968461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3400513 |
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| End bp | 3401577 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637921779 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_528153 |
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| Protein GI | 90022326 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.418282 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTTC TAAAAAACGA TCGTTTCTTA AGGGCGCTAA TGCGCCAACC TGTAGACCAA
ACCCCCGTAT GGATGATGCG CCAAGCTGGG CGCTATTTAC CTGAATATCG CGCTACACGT
GCGCAAGCAG GTGATTTTAT GGGGTTGTGT ACTAACCCCG AGCGCGCTTG TGAAGTGACG
CTTCAGCCGC TTGAGCGCTA TCCCCTAGAC GCAGCAATTT TGTTTTCCGA TATTCTCACC
ATTCCCGATG CGATGGGTTT AGGGCTTTAC TTCGAAACCG GTGAAGGCCC CAAGTTTAAG
AAGACTATCT CTACTGCTGC AGATATCGAA AAGCTCGAAG TGATTAAACC CCTTCAAGAT
TTACCCTATG TAATGGATGC AGTGAGCACT ATTCGCCGTG AGCTAAATGG GCGAGTTCCA
TTAATAGGTT TTTCTGGCAG CCCCTGGACC CTTGCAACCT ACATGGTGGA AGGCGGTTCG
AGTAAAGATT TTCAAAAAAC CAAAGCGCTT ATCTATAACC ATCCAGAAGC TGCTGCGCAG
TTGATGGATA AGCTTGCCGA CTCTGTTATC GCCTACTTAA ACGCGCAAAT TGATGCCGGA
GCACAGGCTG TTCAAATATT TGACTCGTGG GGTGGGGCTT TATCTCACGA CGCTTACAAA
ACCTTCTCGC TTGCGCCTAT GGCCAAAATT GTGAAAGGCT TAAAGCGCGA GAACGAAGGC
AGAAAAGTAC CGGTTATACT TTTCACTAAA GGCGGCGGAC AATGGCTAGA AGCTATGGCT
GACGCTGGGG CAGACTGTTT GGGCTTGGAT TGGACTACTG ATATCGGTCA AGCGAGAGCG
CGTGTTGGCG ATAAGGTGGC TCTGCAAGGG AATATGGACC CAAGCATACT GTACGCATCA
CCAGATCGCA TTCGCGAAGA AGTAGCGCGT ATTTTAGCGA GCTATGGAGC GGGAACAGGC
CATGTATTTA ACTTGGGGCA CGGCATTACG CCTGGCGTTG ACCCAGAGCA TGCTGGAGCA
TTTATTCGTG CAGTTGGCGA ACTTTCTGCT CAATATCATA AGTAA
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| Protein sequence | MTVLKNDRFL RALMRQPVDQ TPVWMMRQAG RYLPEYRATR AQAGDFMGLC TNPERACEVT
LQPLERYPLD AAILFSDILT IPDAMGLGLY FETGEGPKFK KTISTAADIE KLEVIKPLQD
LPYVMDAVST IRRELNGRVP LIGFSGSPWT LATYMVEGGS SKDFQKTKAL IYNHPEAAAQ
LMDKLADSVI AYLNAQIDAG AQAVQIFDSW GGALSHDAYK TFSLAPMAKI VKGLKRENEG
RKVPVILFTK GGGQWLEAMA DAGADCLGLD WTTDIGQARA RVGDKVALQG NMDPSILYAS
PDRIREEVAR ILASYGAGTG HVFNLGHGIT PGVDPEHAGA FIRAVGELSA QYHK
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