| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2668 |
|---|
| Symbol | |
|---|
| ID | 3968487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3383445 |
|---|
| End bp | 3384455 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637921766 |
|---|
| Product | tRNA isopentenyltransferase |
|---|
| Protein accession | YP_528140 |
|---|
| Protein GI | 90022313 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase |
|---|
| TIGRFAM ID | [TIGR00174] tRNA isopentenyltransferase (miaA) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCTGAAT CAAATAAAGA GCTAGTCGAC CGCTTAAGCG CGCCAAGAGG CGATCGAAAG
CCTTTAGCTA TTGCGTTGGT TGGGCCAACG GCTGCAGGTA AAACAGATTT AGCTATTGCG
CTACACCAAC AGTTGGGCGC CGAAATTATT AGCGTAGATT CCGCTATGGT GTACCGCGAT
ATGAATATCG GTACTGCCAA GCCAACTGCT AGTGAACTGG CATTAGCTCC TCACCGTCTT
ATTGATATAC GCGATCCTGC GGAAGCATAC TCGGTAGCAG ATTTTTGTCG CGATGCTAAA
GCTGAAATAG AATCGATACA TTCGCAAGGT AAAATACCGG TACTTGCGGG CGGTACAATG
ATGTACTTTA AAGCGCTGCT GGAAGGCCTA TCCGACATGC CTGCTTCAGA CCCAGCCGTG
CGTGCACAAA TAGATAAGCG CGCGAGCGAA GAGGGCTGGC CTGCACTGCA CAGCGAGCTG
GCAAGTGTTG ACCCAGAAAC CGCTGCCAAT ATTCATCCCA ATCATTCCCA TCGCATATCG
CGCGCGCTGG AAGTGTATGT AATTTCGGGC AAGCGCATGT CGGCGTGGCG GGGCCAAGCC
AATAACGGGT TAATTGATAC ATACGATTGG GTGCAAATAT GTGTAGCGCC GCGAGAGCGA
ACACTTCTTC ACCAAAGAAT TGCCCAGCGT TTTGATATGA TGTTGGAACA AGGCTTTATT
GACGAGGTCA GAGCTTTGTA TAGCCGCAAC GACCTGAATG TAGATATGCC GTCTATTCGT
GCGGTGGGGT ACCGCCAAGC GTGGGATTAC CTTGCGGGCG TATCCAGTTA TGACGAAATG
CGAGAAAAAG GCATAGCCGC CACCCGCCAA TTGGCAAAAC GGCAATTTAC TTGGTTACGC
AGTTGGCAGG GGCTCGAATG GATCTATACT CAAGATGAAG ACGCTAATTT GCTTTCTTCT
GAAGAAATTG TGAATAAAGC CTTGAATTAT TTGGCCAAAA GAACAATATA A
|
|---|
| Protein sequence | MAESNKELVD RLSAPRGDRK PLAIALVGPT AAGKTDLAIA LHQQLGAEII SVDSAMVYRD
MNIGTAKPTA SELALAPHRL IDIRDPAEAY SVADFCRDAK AEIESIHSQG KIPVLAGGTM
MYFKALLEGL SDMPASDPAV RAQIDKRASE EGWPALHSEL ASVDPETAAN IHPNHSHRIS
RALEVYVISG KRMSAWRGQA NNGLIDTYDW VQICVAPRER TLLHQRIAQR FDMMLEQGFI
DEVRALYSRN DLNVDMPSIR AVGYRQAWDY LAGVSSYDEM REKGIAATRQ LAKRQFTWLR
SWQGLEWIYT QDEDANLLSS EEIVNKALNY LAKRTI
|
|---|
| |