| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2617 |
|---|
| Symbol | |
|---|
| ID | 3968610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3314136 |
|---|
| End bp | 3314813 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637921715 |
|---|
| Product | OmpA family protein |
|---|
| Protein accession | YP_528089 |
|---|
| Protein GI | 90022262 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.19379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAT TACTTTACAG CCTGACCAAA ATATCATCGG TGGCCACTGT AGCTGGCGTA
TTGCTTACTG GCTGTATGAC TTACGATCCT TACACTGGTG AAGAAAAAAC CAGTAACGCG
ACTAAAGGCG CAGGTATTGG CGCGGTAACC GGCGCAATTA TTGGTGCTGC TACATCAAGC
GATAAAGATC GCGACCGCGG AATTATTACC GGTGCTGTAG CAGGCGCGGC CATAGGTGGT
GGTGTTGGTT ACTACATGGA CAAACAAGAA GCAGAGCTTC GTCACCAATT GCAGGGCACT
GGTGTACAGG TGCGCCGCGA AGGTAATAAC TTATTTTTGG TAATGCCTGG CAACATTACT
TTCGATACTG CTCAGTACAG CATTCGCAGC CAATTCTACG AAGTATTAGA TTCTGTGGCG
GTTGTGCTTA AGAAATATGA TAAAACCGCT ATTTTAGTGT CGGGTCACAC CGATAACCGC
GGCAGCTCAG ATTACAACCA AACCCTAAGC GAGCAACGTG CAGGCAGCGT AAAAGCCTAC
CTAATGCAAA AAGGTGTTGC GGCAGGTCGT GTTAACTCTG TGGGCTATGG TTACCGCTAC
CCAGTGGCCT CTAACGATAG CGCAGCTGGC AGAGAGCAAA ACCGCCGTGT AGAACTTAAG
CTAGAGCCTA TTGAATAA
|
|---|
| Protein sequence | MKELLYSLTK ISSVATVAGV LLTGCMTYDP YTGEEKTSNA TKGAGIGAVT GAIIGAATSS
DKDRDRGIIT GAVAGAAIGG GVGYYMDKQE AELRHQLQGT GVQVRREGNN LFLVMPGNIT
FDTAQYSIRS QFYEVLDSVA VVLKKYDKTA ILVSGHTDNR GSSDYNQTLS EQRAGSVKAY
LMQKGVAAGR VNSVGYGYRY PVASNDSAAG REQNRRVELK LEPIE
|
|---|
| |