| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2554 |
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| Symbol | |
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| ID | 3968720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3240385 |
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| End bp | 3241971 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921652 |
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| Product | sensor protein PilS |
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| Protein accession | YP_528026 |
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| Protein GI | 90022199 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.041487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACC AGTACCAACA CAACCCGCAA CTACTGCGCG TATATTTATT TTACCGCGTT
GCCCTTTCGA CTATTTTGCT CGCCATGTAT GAAACTGGCC TAGGTCAGAA TGCACTGGGC
ACCCACGAAC CAGAGTTGTT TCGCTGGACC ATCGCACTGT ATACGGCCAT ATCCATTGGC
TCGCTGTACG TTTTTCGCCC AAGTTTATTA ACGCGCTCGC TTCACCGGTT AACTTTTTTA
CTTGTATTAG ATCTTATTGC CATGCTACTG GTTATCCATT CTAGCGGTGG CCCAGATAGC
GGCTTGGGCT ATTTACTACT TGTATGCACA GCCATGGCCA GTGTGTTTAT CCGCGGTCAA
CTTGCTTTAG CCTACGCAGC ACTTATTACT TTGTTTCTTA TTGCAGAAAC CATCTACATT
ACCCAAGACC CCAAAGACCT TACCAAAGGC CTATTTTCTA CCGGTATTCT TGGCATTCTG
GTGTTTGCCA CCACAATTAC TTTTTTGTAT TTAACCGAGA AAATTCGCTC GAGTGATATT
GCGGCCGTAA CACAAGCAAA ATACGCAGAA CACTTAGAAA AATTGGCACA ACATATCGTC
ACACGTATGC GCACCGGCGT TGTAGTTATA GATGGCGAAA ACAAAATAGA GCTGATTAAT
GAATCTGCAC TGCAACTGCT AGATTTACCG CAAGACACCG CCTACATAGG CGCCCCACTC
TCTGATTTCT CTAATTTGGA AGATATGCTC CAGCAATGGC AGTACAACCC CATTGTAGGT
TTACCCAAGG TACATACATT GCGTGACGGG CATGAGGTGC GTATAAACTT TGCACAACTT
GAAACGAATG AACTTGCGCG CACTATTTTG TATATAGAAG ATCACCGCGC CATAGTGCAG
CAAGCTCAAC AGTTAAAGCT TGCATCTCTA GGTAGGCTCA CAGCGAGTAT CGCGCACGAA
GTACGCAACC CTCTCGGAGC AATCGCCCAT GCTGCTCAGC TACTGAAAGA GTCCGAGACC
ATCGATGCTG GCGACAATCG CTTAACCGAA ATTATTTTGC AGCATTCTGA GCGTGTAAAC
CAAATTATTA ATAACACCCT GATCCTGTCA CGCCGAAAAG AACCTAAACC AGAAATGCTC
GACTTGGCCA CTTGGCTGCC ACACTTTATT AACTCGTTTA AGCTCGCGAT TGAAGGCAAA
ATAGACTTAC ATATAGTGCA CGCTCAAATT CAAGCTAAAG CAGACCCCTC GCAACTTACT
CAGGTACTTA CCAACTTGTG CGAAAATGGT TTGCGACACA GCAAATTGCT AACAGGGGAA
GCACGCATTA AAATTTGCGC AAATATAAGT GTTAACGATC ACACCCCCTA TATAGATGTG
ATCGACTTTG GCGCGGGCGT CCCTGAGCAC CAACTGCAAC AAATATTCGA CCCATTCTTT
ACAACGGACG ATAAAGGTAC AGGGCTAGGG CTGTATATTT CCAAAGAGCT ATGTGAAATT
AACCAAGCCT CGTTGCACTA CAACCGCACA CAAGACAATC AAAGCTGCTT TAGAATAAGC
TTTTCGCACC ACCAGAGAAA AATATAA
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| Protein sequence | MENQYQHNPQ LLRVYLFYRV ALSTILLAMY ETGLGQNALG THEPELFRWT IALYTAISIG
SLYVFRPSLL TRSLHRLTFL LVLDLIAMLL VIHSSGGPDS GLGYLLLVCT AMASVFIRGQ
LALAYAALIT LFLIAETIYI TQDPKDLTKG LFSTGILGIL VFATTITFLY LTEKIRSSDI
AAVTQAKYAE HLEKLAQHIV TRMRTGVVVI DGENKIELIN ESALQLLDLP QDTAYIGAPL
SDFSNLEDML QQWQYNPIVG LPKVHTLRDG HEVRINFAQL ETNELARTIL YIEDHRAIVQ
QAQQLKLASL GRLTASIAHE VRNPLGAIAH AAQLLKESET IDAGDNRLTE IILQHSERVN
QIINNTLILS RRKEPKPEML DLATWLPHFI NSFKLAIEGK IDLHIVHAQI QAKADPSQLT
QVLTNLCENG LRHSKLLTGE ARIKICANIS VNDHTPYIDV IDFGAGVPEH QLQQIFDPFF
TTDDKGTGLG LYISKELCEI NQASLHYNRT QDNQSCFRIS FSHHQRKI
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