| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2551 |
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| Symbol | |
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| ID | 3968717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3236245 |
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| End bp | 3237210 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637921649 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_528023 |
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| Protein GI | 90022196 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.682293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00325884 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGATAA GTGCAGCCCT AACAGCCCGA GTACCTCAAG AAATGGCGGG TAATCGCTTG
GATCAGGTTT GTGCCGATTT GTTCCCTGAT TACTCCCGTT CACGCATCCA GCAATGGATA
AAAAGTGGAA AATTACTGGT TGACGATAAA ACCGGTAAGG CCAAACAAAA GGTGTTTGGT
GGCGAAAACT TGGTTCTCGA GCCCGAATTG CAAGAAGAGG GCGAGTGGCT GCCCGAGCCA
ATAAACTTAA ATATTGTGTA CGAAGATGAG CATATTCTTG TAATAAACAA GCAAGCCGGC
TTAGTTGTGC ACCCTGCTGC AGGTAATTGG TCTGGAACCC TACTAAATGG CTTGTTACAC
CACGTGCCAA GCCTTGTGAA TGTGCCGCGC GCGGGCATAG TGCACCGCTT AGATAAAGAC
ACCACGGGCT TAATGGTAGT AGCCAAGTCA TTGCCCACCC AAACCCACCT TGTGGCGCAA
TTGCAGGCCC GAACGGTATC GAGGCATTAC CAAGCTGTAG TGCATGGCAC TTTTGCAGCA
AAAGATAAGC TGGGAACGGT AGACATTGCC ATAGGCAGGC ACCCAACTCA GCGGGTAAAA
ATGGCGGCAT TAGAAAACAG CGGCAAGCCT GCGGTTACCC ATTATCGCGT AGTAAAAGAT
CTACAAGGGT TTGCCCATGT GCATTTACAG CTAGAAACCG GCCGCACCCA TCAAATAAGG
GTACATATGG CCCACATTGG TTACCCGTTG GTTGGGGATC AGGTATACGG TAAAAAAGTC
CCTACAAAGG TGCGCAATCA CAACCCTGGT GCTGTGCATG CCGAAGCCTT CCCTCGCCAA
GCTCTACACG CTTGGCGATT AAGTTTGGTT CACCCTGTAA CCGAAGAAAC GGTTTTTTGG
GAGGCGGATT TACCAGAAGA TATGGTGCAA CTCATTGATC AGCTTGCGGA GGGCGAGGGT
GATTGA
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| Protein sequence | MSISAALTAR VPQEMAGNRL DQVCADLFPD YSRSRIQQWI KSGKLLVDDK TGKAKQKVFG
GENLVLEPEL QEEGEWLPEP INLNIVYEDE HILVINKQAG LVVHPAAGNW SGTLLNGLLH
HVPSLVNVPR AGIVHRLDKD TTGLMVVAKS LPTQTHLVAQ LQARTVSRHY QAVVHGTFAA
KDKLGTVDIA IGRHPTQRVK MAALENSGKP AVTHYRVVKD LQGFAHVHLQ LETGRTHQIR
VHMAHIGYPL VGDQVYGKKV PTKVRNHNPG AVHAEAFPRQ ALHAWRLSLV HPVTEETVFW
EADLPEDMVQ LIDQLAEGEG D
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