Gene Sde_2529 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2529 
SymboltolB 
ID3968756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3201338 
End bp3202675 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content46% 
IMG OID637921622 
Producttranslocation protein TolB 
Protein accessionYP_528001 
Protein GI90022174 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000320948 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTGG GGAGAAAGCA TTTGGCTAAG GCAGGCAGTA AATGGTTGGC AGGTTCAAGC 
CAATGGGCGC TGAGCTTAAT GCTTATATTG GCTGCAGGCA TGGCCCGTGC AGAGCTGGTG
ATTGAGATTA CTCAAGGGGC GGACAACCCC ACCCCAATTG CCGTAGTGCC TTTTGGTGGC
AATGGTGGCT TGAGTGAAAA TGTATCTCGT ATCATATCTG CCGATTTAGA TCGCAGTGGT
TTATTTGAAT CTAAAAGCCC TGAAAATATG TTGTCGTTTC CATCGAAACA AGCAGATATT
TTTTATCGCG ATTGGCGTAT ATTAGGCACC GATTATTTAG TGATAGGTGA TATTCAGCGA
AGCGAAAGCG GCTACGTAGC TGAGTACGGT TTGTACGACG TGCTTCAGCA GAAAAAAATG
TTAGGTAAAG TGCTATCTGT AGGCCCAACG GGTTTGCGTG ATATGGCGCA CAAAATTAGT
GATGATGTGT ATCAAGCGTT AACAGGCATT CGAGGCGCTT TCTCTACCAA GATTCTCTAT
ATCGAAGATA TGGGGCCTAG CGTTAAAGAA AGATATCGCT TAATTAAGGC TGATGCTGAT
GGCGCAAGGG AGCAGTTGAT TTTTAAGTCG AGTGAGCCTT TGCTATCACC CGCTTGGTCT
AATGATTTGA CACAGGTAGC GTATGTATCT TTTGAAACAT CGCGACCAGC AATATTTAGA
CATAACTTAA TTACCGGTAA GCGAGAGCAA CTTACAAACT TCAAGGGGTT GAATGGCGCG
CCAGCATGGT CGCCTGATGA TTCTAAATTA GCTCTCGTGT TATCGAAGGA TGGCAACCCA
GAAATTTACA TTTTGGACAT TGCTACAAGA GCGCTCCAGC GAGTCACAAA AACCCACTCG
GCGGTGATAG ATACCGAACC AAACTGGACC GCGGACGGAA AAGGGATAAT TTTTACGTCA
AATCGCGGTG GAAACCCACA AATTTATCAA GTGGGTCTTG CAACGGGACG GGTGGAACGC
TTAACCTTCG AGGGTGATTA TAATGCCAGA CCACGGGTCA CGCCGGATGG TAAAAGTTTG
GTTATGGTTC ACAGGGAAGA TGGAGTATTC CATATTGCTT GGCAGGACAT TCAGTCAGGT
GACATGCGTA TCCTGACTGA AACGTGGTTA GATGAATCGC CCAGTATTGC TCCGAACGGC
GCTATGCTAT TGTACGCAAC ACAGCATAAC AACAAAGGTG TATTGGCCGC GGTTTCAATT
GACGCAGGGG TAAAATTTCG TCTGCCTTCT AAACAGGGTA GCGTAAGAGA GCCAGCTTGG
TCGCCTTACG CGAAATAG
 
Protein sequence
MILGRKHLAK AGSKWLAGSS QWALSLMLIL AAGMARAELV IEITQGADNP TPIAVVPFGG 
NGGLSENVSR IISADLDRSG LFESKSPENM LSFPSKQADI FYRDWRILGT DYLVIGDIQR
SESGYVAEYG LYDVLQQKKM LGKVLSVGPT GLRDMAHKIS DDVYQALTGI RGAFSTKILY
IEDMGPSVKE RYRLIKADAD GAREQLIFKS SEPLLSPAWS NDLTQVAYVS FETSRPAIFR
HNLITGKREQ LTNFKGLNGA PAWSPDDSKL ALVLSKDGNP EIYILDIATR ALQRVTKTHS
AVIDTEPNWT ADGKGIIFTS NRGGNPQIYQ VGLATGRVER LTFEGDYNAR PRVTPDGKSL
VMVHREDGVF HIAWQDIQSG DMRILTETWL DESPSIAPNG AMLLYATQHN NKGVLAAVSI
DAGVKFRLPS KQGSVREPAW SPYAK