| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2519 |
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| Symbol | prfC |
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| ID | 3968744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3190653 |
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| End bp | 3192236 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921610 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_527991 |
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| Protein GI | 90022164 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCAC ATTCCACAGC AGTAGGTACC GCCAAGCGAC GCACCTTCGC CATTATTTCC
CACCCGGATG CCGGTAAAAC CACCATCACT GAAAAGCTAT TATTGTTTGG AAATGCTATT
CAGGTGGGTG GTTCTGTAAA AGGTAAAAAA GGCCCCCACG CTAAATCTGA CTGGATGAGC
ATGGAGCAGG AGCGCGGTAT TTCGGTAACC TCTTCTGTTA TGCAGTTCCC CTATAAAGAG
CGCACAGTAA ACTTACTCGA TACCCCTGGG CACGAAGATT TCTCGGAGGA TACCTACCGT
ACCTTAACCG CGGTCGACTC GGTGTTGATG GTGATAGACG GCGCGAAAGG TGTGGAAGAT
CGCACTATTA AATTAATGGA AGTGTGCCGA TTGCGGGATA CACCCATTCT ATCGTTCATA
AACAAAATGG ACCGTGATAT TCGCGACCCT ATTGATGTGA TGGACGAAAT CGAAACCGTA
TTGAATATTG AAGCGGCCCC CATTAATTGG CCGATTGGCA TGGGGAAAGA ATTTAAAGGC
GTATACAACC TCTACACCGA TATTATTCAT GTATTTCACC ATGGCCAAGG TAGCCGTATT
CCAGACGATA CCCAAATTAA AGGGCTAAAT AGCCCAGAAG CCGATGCATT ACTTGGTGCC
TATGCTGCCG ATATTCGCGA TGAAATAGAA CTCGTTAAGG GCGCAACCCA CAAATTCGAT
TTAGATGCTT ACTTGGCCGG AAAGCTCACG CCCGTATTTT TTGGTACTGC ACTGGGGAAT
TTCGGTGTGC GAGAAATGTT AGACGGTTTT GTGGAGTGGG CACCACCGCC ACTAGATCGC
GAGGCGAACA CGCGCGTTGT ATCTGCCGTT GAAGATAAAT TTTCGGGCTT CGTTTTTAAA
ATCCAAGCGA ATATGGACCC AAAACACCGA GATAGAATTG CATTTATGCG GGTGTGTAGT
GGTACTTACA CGCGCGGCAT GAAAATGCGC CATGTGCGTT TAGGGAAAGA TGTAAAAATA
AGTGATGCCG TTACATTTTT AGCCGGTGAT CGCAGCCAAG TAGAAGAGGC CATATCTGGC
GATATTATTG GTTTACACAA CCACGGCACT ATTCAAATTG GCGATACCTT TACCGAAGGC
GAAGATTTAA AATTCACGGG TATTCCTCAC TTTGCCCCAG AATTGTTTCG TCGTATTCGC
TTAAAAGACC CACTTAAAGT AAAACAGCTG CAAAAAGGGC TGCAGCAGCT GTCTGAAGAA
GGCTCTACAC AGGTTTTCTT TCCATTGCGC AATAACGACA TCATTGTAGG CGCTGTAGGT
GTACTACAAT TTGAAGTGGT AGCGTATAGA TTAAAAGATG AATACAAAGT AGAAGCTATT
TACGAGCCGG TAAGTGTTGC AACTGCTCGC TGGGTAGACT GTGAAGACGA CAAGAAAATG
GCTGAGTTTA AACGCAAGTG TGAAGATAAC TTGGCGATTG ATGGCGGTGG TCACTTAACC
TATTTAGCAC CTACTCGAGT GAATCTTTCC TTGTCACAGG AGCGTTACCC GGACGTGTTG
TTCCGCTCTA CGCGTGAACA TTAA
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| Protein sequence | MSAHSTAVGT AKRRTFAIIS HPDAGKTTIT EKLLLFGNAI QVGGSVKGKK GPHAKSDWMS
MEQERGISVT SSVMQFPYKE RTVNLLDTPG HEDFSEDTYR TLTAVDSVLM VIDGAKGVED
RTIKLMEVCR LRDTPILSFI NKMDRDIRDP IDVMDEIETV LNIEAAPINW PIGMGKEFKG
VYNLYTDIIH VFHHGQGSRI PDDTQIKGLN SPEADALLGA YAADIRDEIE LVKGATHKFD
LDAYLAGKLT PVFFGTALGN FGVREMLDGF VEWAPPPLDR EANTRVVSAV EDKFSGFVFK
IQANMDPKHR DRIAFMRVCS GTYTRGMKMR HVRLGKDVKI SDAVTFLAGD RSQVEEAISG
DIIGLHNHGT IQIGDTFTEG EDLKFTGIPH FAPELFRRIR LKDPLKVKQL QKGLQQLSEE
GSTQVFFPLR NNDIIVGAVG VLQFEVVAYR LKDEYKVEAI YEPVSVATAR WVDCEDDKKM
AEFKRKCEDN LAIDGGGHLT YLAPTRVNLS LSQERYPDVL FRSTREH
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