Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2429 |
Symbol | |
ID | 3966649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3074780 |
End bp | 3075475 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637921520 |
Product | ribonuclease T |
Protein accession | YP_527901 |
Protein GI | 90022074 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.759564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAATTG AAAACGAAAA ATTAGATGAG AACGGTAAAA CACCTTTTGC AGCTCGATTT CGCGGTTTTT TGCCCGTAAT TGTTGACGTT GAAACAGGCG GCTTTAACAG CCACACCGAT GCTCTATTAG AAATTGCTGC AGTTACCCTA AGAATGGATG AAGACGGGGT TCTGCATCGC CACGAAACCT TCGACTTCCA TGTAGACCCA TTCGAAGGTG CGAACATAGA GCAAAGCGCA CTGGACTTTA CCGGCATAGA CCTAGACAGC GACGACCGCT GCGCCGTGCC GGAAGATATA GCCATTAACG AAATTTTCCG CTCTGTACGC AAAGCGGTAA AAGAGAACGG CTGCAACCGC GCAGTGATGG TTGCACATAA CGCGCACTTC GATTTGGGCT TTGTTAACGC CGCCAGCAAC CGCTGCGATG TTAAGCGCAA CCCCTTTCAC CCATTCTCGT GCTTCGATAC AGCCACACTA TCGGGCTTAG CCTTTGGCCA CACCGTTTTA GCACGAGCAT GCCAGCTAGC GAAAATTGAG TTTAGCAACC GCGAAGCCCA CTCTGCAGCT TACGATGCAG AAAAAACAGC CGACCTGTTT TGTACAATTG TAAATCGCTG GAAGGATCTA GGTGGCTGGC CACTACCAGT AGGCGACAAT CTAGCCATGG ATGAAACCAG CCTAGAAGAA GAGTAA
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Protein sequence | MTIENEKLDE NGKTPFAARF RGFLPVIVDV ETGGFNSHTD ALLEIAAVTL RMDEDGVLHR HETFDFHVDP FEGANIEQSA LDFTGIDLDS DDRCAVPEDI AINEIFRSVR KAVKENGCNR AVMVAHNAHF DLGFVNAASN RCDVKRNPFH PFSCFDTATL SGLAFGHTVL ARACQLAKIE FSNREAHSAA YDAEKTADLF CTIVNRWKDL GGWPLPVGDN LAMDETSLEE E
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