| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2289 |
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| Symbol | |
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| ID | 3967342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2913333 |
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| End bp | 2915945 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921380 |
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| Product | outer membrane protein |
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| Protein accession | YP_527761 |
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| Protein GI | 90021934 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000176254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000033388 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAGACGT TGAATAATCA AAAAACACCT CGCCTAAAAA GTTTTCATCG CAAAAAAATA
TCTACTATTG TTGGGCTAGT GTGTGGCTCG CTGTTAGTTA GCGATATAGC TGCCGCGCAA
GAAAAGCCTG CAGGGCCAAT AGAAGAAGTT TACATTGTAG GCAGTCGCGC GCTGGGCCGC
ACCGCAGAGG ATTTGCCGGT GCCCGTAGAC GTACTAAGTG CAGATAGCCT AGAAAAAACA
GGTCAGACGG AAGTAGGGCG CATGCTACAA ATGACAGCCC CTTCGTTTAA TTTTTCTAGC
TCTTCTGTGA GTGATGGCAC CGATGCATTG CGCCCAGCCA CCTTGCGTGG TTTAGGGCCA
GATCAAACCC TTGTGCTCAT TAACGGCAAG CGTCGCCACC AAGCATCGCT TATTCATATT
AATACCTCTG TTGGTCGCGG TACGGCAGGT ACCGACTTAA ATGCTATTCC TGCGGCATCT
ATTCAGCGTA TTGAAGTGCT GCGCGATGGT GCCGCTGCTC AGTACGGTTC AGATGCCATT
GCGGGCATTA TTAATATAGT GCTTAAAGAC GATAATGAGG CGGGTTCTGT GTCGGCGTCC
TATGGCCAAT ATTACGAAGG TGATGGGCAA ACACTAAATT TAAATGCTAA CAAAGGGTTT
AATTTGGGTG ATACTGGTTA TTTAAATATA ACGGGTAATT TTCGCGATAG AGGCAACACA
AACCGCGCGG CGCCTCAAGC AGGGTGTTTG TATGGCGGCT GTGAAGATAC CGACGATAAC
GGTTATTTAG AGCCTGCACC TGGTAACGAA GCGCTGGAGG TAAGTGGGCC AGCACGTAAT
GGCTTTCGTA TTGGCGATGC AGATTCTCAG CAGGTCGCGT TGGTGTTAAA TGCGGGTATG
GAGCTAGGAG CCGGTGAGCT TTATGGTTTT ATTACTTACT CGCAAAGGGA GAATGAATCT
GGTGCTTTTT ATCGAAACCC CACCGGTTCA AATGGTGTAG ATAACGCACT CTTAACCGAT
GGTTTAAACC CTGCCGATAC CGACGGTTTT TTACCACTTA TTTATTCTGA AATTGGCGAC
CTTTCGTTCA ATATAGGTTA TACGCTAGAG TTTGATAACG ATGCATCGCT AGATTTATCT
TACACGCGCG GTGCAAACCA AATAGATTAC ACAACCAAAA ACAGTGCTAA CTACTCATAT
GCAAATTACT TGCAGTTTGA TGAAGGCTTA TCCGATTCGG AAATTCGCTC GCAAATACCA
AGAGAAGCGT ACGCTTATGG TTTGGAGCTT TCGCTAGAAA CTATAAACCT TAACTTTACC
AAACAATTTT CGCGTTTTAA CCTTGCCGCA GGGGCAGAGG TGCGCACAGA CGAATTTAAA
ATTAAAGCCG GTGACGAGTA TTCTTACCGC GATTACGATA CAGACCCAGA TACCGGTGAT
GCGTTATATG CGCAAGATGC CGGTGGCAGT ATTCAAGGTT TTAACGGTAT TTCGCCCGAA
TCTGAGGTGA GTGAGTCGCG CAATGTTATG TCACTGTATG TAGATGGTGA ATACGAGGCG
ACTGACGACT GGATAGTAAG TGCCGCCATG CGTTTTGATG AGTACGATGG CTTCGGCAAT
ACCATAAACT ACAAGCTTGC AAGTAAATAC ACTTTAACCG ATAGCTTTAC CGTACGCGGT
TCGTTAAGCA CTGGCTTTAG GGCCCCCTCC ATGCAGCAGT TGTACTTTAA CAACATTAGC
ACCCAAATAC GTGACGCAGG CGCCGTAACC GTTGGTACCT TCCGCAATGA TAGCCCTGCG
GTGCGCGCCC TAGGTGTACC AGAACTAAAA GAGGAGGAGT CCACCAATAT GAGTATTGGC
TTTATTGCCA GTATTACACC CGAGTGGAAT ATTACGGCAG ATTTCTACTC GATTAAAATC
GACGACCGAA TTGCTATAAG TAACCAGCTT TCTGCAGAAA ACGACCCTGG TGACGGCGCA
CTGACTGCAG CGTTAGAAGA ATCCGGTGCG GCAGCGGCAC AATTCTTTTT AAACGGGGCT
AATACAGAAA CGACGGGTGT GGATATTGTA TCTACATATA GCGGAATCGA CTTTTTAAGC
GGTAACCTAG ATATAACCTT TGCAGCCAAC TTTACCGAAA CGGAAGTAAC CAGTATTTAT
GTGCCTAGCT CCGGTGCACT GGCTGCAGTA AACCCAAGTG TAGTGTTTAG TGCGCAAGAT
ATATCTATAG TTGAAGAGTG GCAGCCAAAA GATAGAATCA TTTTAAGCGG TGATTATATG
ATTGGCGATA TCTCGGTAAA CCTTGCCTTT AATCGCTACG GCGAATACAC CGTGCTAGAT
ACTACCTCGC AAACTTATGG TTCGGAATGG TTAACCGATG TACGCATTGG CTATGCTATT
TCAGATAATA TGGACATTTA TTTTATGGCC AATAATTTAT TTGATGTAAC GCCAGAGGAA
ACCACCAACA CTGGCACGCG CGGAGGTTTG TTTGAATCTG CGCCGGGTGC AGAAGACATG
GCAAGCGATA CGGTATTCCG CTATTCACGC AGAAGTGCGC CGTTTGGTTT TAATGGCGGC
TTTTACTCAG CGGGTATTAA TTACCGTTTT TAG
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| Protein sequence | MKTLNNQKTP RLKSFHRKKI STIVGLVCGS LLVSDIAAAQ EKPAGPIEEV YIVGSRALGR
TAEDLPVPVD VLSADSLEKT GQTEVGRMLQ MTAPSFNFSS SSVSDGTDAL RPATLRGLGP
DQTLVLINGK RRHQASLIHI NTSVGRGTAG TDLNAIPAAS IQRIEVLRDG AAAQYGSDAI
AGIINIVLKD DNEAGSVSAS YGQYYEGDGQ TLNLNANKGF NLGDTGYLNI TGNFRDRGNT
NRAAPQAGCL YGGCEDTDDN GYLEPAPGNE ALEVSGPARN GFRIGDADSQ QVALVLNAGM
ELGAGELYGF ITYSQRENES GAFYRNPTGS NGVDNALLTD GLNPADTDGF LPLIYSEIGD
LSFNIGYTLE FDNDASLDLS YTRGANQIDY TTKNSANYSY ANYLQFDEGL SDSEIRSQIP
REAYAYGLEL SLETINLNFT KQFSRFNLAA GAEVRTDEFK IKAGDEYSYR DYDTDPDTGD
ALYAQDAGGS IQGFNGISPE SEVSESRNVM SLYVDGEYEA TDDWIVSAAM RFDEYDGFGN
TINYKLASKY TLTDSFTVRG SLSTGFRAPS MQQLYFNNIS TQIRDAGAVT VGTFRNDSPA
VRALGVPELK EEESTNMSIG FIASITPEWN ITADFYSIKI DDRIAISNQL SAENDPGDGA
LTAALEESGA AAAQFFLNGA NTETTGVDIV STYSGIDFLS GNLDITFAAN FTETEVTSIY
VPSSGALAAV NPSVVFSAQD ISIVEEWQPK DRIILSGDYM IGDISVNLAF NRYGEYTVLD
TTSQTYGSEW LTDVRIGYAI SDNMDIYFMA NNLFDVTPEE TTNTGTRGGL FESAPGAEDM
ASDTVFRYSR RSAPFGFNGG FYSAGINYRF
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