Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2266 |
Symbol | |
ID | 3967942 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2876397 |
End bp | 2878160 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637921357 |
Product | regulatory proteins, AsnC/Lrp |
Protein accession | YP_527738 |
Protein GI | 90021911 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.278164 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTCT GCGAAATAAA AAATCTGTGT AAAAGCTACG GTGAAGGTAG CAACAAGACT GCTGTTCTAA ACGACATAAA CCTTTCGATA GAAGAAGGCG AGTTTGTTGC CATTGTAGGG TTTTCGGGCA GCGGTAAAAC CACCTTGGTC TCAGCCTTAG CAGGGCTACT CGAAGGCGAT AGCGGCGAAA TACTCTTTAA AGGCAAGCCC GTAACAGGCC CCTCGCCAGA GCGTGGCATT GTATTTCAAA GCTACTCGCT TATGCCTTGG CTTACCGTAT TCGACAACAT TGCACTTGCA GTGGATCAAG TGTTTTGTTC TTGGCCTAAA TCAAAGCGCA AGGCCCATGT GCAGAAGTAT ATTGACATGG TGAGCTTGTC GCACGCTACA GATCGCCGCC CAGCAGAGCT ATCTGGCGGC ATGCGTCAAA GGGTATCGGT TGCTCGCGCG CTAGCCATGC AACCAGAAAT GCTCCTGCTC GATGAACCGC TTTCTGCACT AGACGCCCTA ACCCGCGCCA ACCTGCAAGA TGAGCTAAAT ATTATTTCGC AGAAAGAAAA GAAAACGATT TTGCTAATTA CCAACGATGT GGACGAAGCG ATTCTTCTTG CGGACAGGGT TATACCTTTA AACCCCGGCC CCAAAGCATC GCTTGGCCCA GAGTTTGTAA TTAACATACC ACGCCCGCGC GATCGCACAG CGATGAACCA CGATGAAGAA TTTAAGTTCC TCCGCAAAGA AATCACCTCC TACCTAATGA AAGTAGGCAT GGAGGCAGCA GGCAACGACG ACTCGAAAAC CCTGCCAGAC TTACAACCCA ATACGTCGTT TCCACCTAAT GATGCAGCTA AACAAGCGGC GCTCGCTACA TCGCCGGCGT TAAATAAATA CGTGGAATTT TCGCAAGTTA CAAAAATTTA CCCTACTCCC AAAGGGCCAT TAACAGTAGT CGATGAGTTC GACCTGAAAA TGAAAAAAGG CGAGTTTATA TCCCTAATTG ATCACTCTGG CTGCGGTAAG TCCACGGTAC TTTCTATGGT TGCCGGCCTT AATGATATTA GCGGCGGCGG TATCATTTTA GATGGCAAGG AAGTTACTGG CGCTGGCCCC GATCGCGGCG TTGTGTTCCA AGCCCCGAGT TTATTCCCTT GGCTAACGGC AAAAGAAAAC GTAAAACTTG GTGTAGAGCG TGTTTATCCG CACGGCACCA AAAAAGAACG CGACGAAATA GTTGAATATT ACTTATCCCG CGTAGGGCTT GCAGACTCTA TGGATAAGAA AGCCGCCGAG CTTTCTAACG GTATGAAGCA ACGCGTAGGT ATTGCCCGCG CATTTGCGCT CTCGCCCAAG CTCCTACTGC TTGACGAACC CTTCGGTATG CTAGATTCAC TCACGCGTTG GGAGCTACAA GAAGTGTTAA TGGAGGTATG GAAACGCACT CAAGTTACCG CAATATGCGT AACTCACGAT GTCGACGAAG CCATACTGCT AGCTGACCGA GTAGTAATGA TGACTAACGG GCCAAACGCA AAAGTGGGCA AAATTTTAGA GGTAGATTTA CCTCGCCCAC GCACCCGTAA GCAGTTGCTA GAACACCCTG ATTACTATCG ATTACGCGAA GAACTATTAA CTTTCTTAGC CGATTGCGAC AAAGAACACG ACGATTCAGA TACACCAGAA CCACAGGAGA AGGAAATTTC ACAAGAAACA GATTCCGCAC CTACAGCACA GAGCCAAGAA GACCGCCTTG CTGTAAACGC ATAA
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Protein sequence | MAFCEIKNLC KSYGEGSNKT AVLNDINLSI EEGEFVAIVG FSGSGKTTLV SALAGLLEGD SGEILFKGKP VTGPSPERGI VFQSYSLMPW LTVFDNIALA VDQVFCSWPK SKRKAHVQKY IDMVSLSHAT DRRPAELSGG MRQRVSVARA LAMQPEMLLL DEPLSALDAL TRANLQDELN IISQKEKKTI LLITNDVDEA ILLADRVIPL NPGPKASLGP EFVINIPRPR DRTAMNHDEE FKFLRKEITS YLMKVGMEAA GNDDSKTLPD LQPNTSFPPN DAAKQAALAT SPALNKYVEF SQVTKIYPTP KGPLTVVDEF DLKMKKGEFI SLIDHSGCGK STVLSMVAGL NDISGGGIIL DGKEVTGAGP DRGVVFQAPS LFPWLTAKEN VKLGVERVYP HGTKKERDEI VEYYLSRVGL ADSMDKKAAE LSNGMKQRVG IARAFALSPK LLLLDEPFGM LDSLTRWELQ EVLMEVWKRT QVTAICVTHD VDEAILLADR VVMMTNGPNA KVGKILEVDL PRPRTRKQLL EHPDYYRLRE ELLTFLADCD KEHDDSDTPE PQEKEISQET DSAPTAQSQE DRLAVNA
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