| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2201 |
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| Symbol | |
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| ID | 3965971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2799174 |
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| End bp | 2800802 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637921291 |
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| Product | Tfp pilus assembly protein PilF-like |
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| Protein accession | YP_527673 |
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| Protein GI | 90021846 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAA AAAACGCTAA AAAAACTAAT AAGCAACCGC TAACCCCTAA GCAGAAGCAA
ATAAGCGTAC TACTAGAACG CGCTATGAAA CACCATAATC AAGGTCAGCT TACACAAGCA
GAGAACCTGT ACAATGCTAT TTTAGAAATC GATGAAAACA ATGTAGATGC GAATCATTTG
CTCGGTGTTA AGCACATTCA AACTCGGCAC TTCGAAAAAG CATTACACTA CTTGAAAAAA
GCTATAGCAA TTCAGCCAAA CAATGCATTA CCTCACTACA ACTTAGGGCT TGCCTACCAG
CATATGTATG CGTGCGACAA AGCTGCATCC AGCTATGAAA ATGCAATTAG ATGTAAACCA
GACCATATAG AATCTATTTT AAACGCAGGC AGTATGTATA TGTACCTACA AGACAGATAC
AATGCCGAGA AAAAATTTAG ACGCGCAGTT CATTTGGCCC CCAATAGGCT TGATGCCAAT
AATAACCTAG GGTTGTGCTT ATTCGAACAA CATCAAAACA AAGACGCTAG AACGTATTTT
ATAAAAGCAA TTGAAATAGC ACCCAACAAC CCTGAAGGTC ACAACAACCT AGCATCCTTG
GAGCAAAGCG AAGGTAATAT TCTTGAAGCG ATGGAAGCCT ACAAAAAGGC AATTACTTTA
AACCCATCGT ACTACACAGC GATAAACAAC CTAGCTTTTA CTCACGAACG ACACCTCGAG
CTAGATAAAG CCAAAAAACT ATATGAGGAA GCTTCGACAA GCCCAGAGCA CGCTGTTATA
TCAAACACTA CGTTGGCCAC ATACTGCTGG ATAGACAACG ATATAGCAGC ATGTGAAAAA
TACTTAGAGA CAACAATCGA CTATTCAACT AAACCCTACT CCCCCAAACA AAATAAGTTT
ATTGTTGGCT ATAGCCAATT TTTATTAGCT CTCATCGAAA ACTATAAACT CGCGCCTATA
CCTTATTTAG AAACCGACGC CGCATTAGCA CCCATTAGTA TTGCCGGAGA CAGCCACAGC
CTAACCTACG CCAACTTGAC TATTCAAATA GAAAACGAGC TTTATAGGGG GGCACCAAAG
TTAATGACTG GGTGTAAAGC GTGGCATCTA GCGAATGAAG CAGAAAACGA ATACAAGTTT
CAGTTCAAGA AACTCATAAC CAAGCAAGCC GAAAACAGCA CATTATTAGT GTCGTTAGGA
GAAATTGATT GCCGCAGCGA TGAAGGCATA CTGGTCGCCT TTAAAAAATC GGCTAAAAAC
AAAAACCTAT CTATCAATTT TAAAGACTCT AAAACGTTAG CCGCATTAAC AAATCAAATA
AGAGACCTGA CCGAGCAATA CTGTAAGTAC GTCAGTGAAG CCTGTGCCAC TAAAAACATT
CAGGCCTATC TTTTTAACGT TCCTGCGCCA CTAAAGGCTA ACCTTGACGA ACAAGCTTTA
TACGAGTTAC AAGTATTAAT AGCCTCCTAC AACCAATCTT TGAGTGAATC GGCTACTGGT
TTCAAGAATA TAAGTATTAT TGATCTATAT TCAGTGACTA ACGATTTGAA TGGATTTAGC
AGTGGGAAAT ATCATATCGA TCAAGTTCAC CTATCCCCCG CTATATGTGG AAAGATATTT
GGCCGTTAA
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| Protein sequence | MKTKNAKKTN KQPLTPKQKQ ISVLLERAMK HHNQGQLTQA ENLYNAILEI DENNVDANHL
LGVKHIQTRH FEKALHYLKK AIAIQPNNAL PHYNLGLAYQ HMYACDKAAS SYENAIRCKP
DHIESILNAG SMYMYLQDRY NAEKKFRRAV HLAPNRLDAN NNLGLCLFEQ HQNKDARTYF
IKAIEIAPNN PEGHNNLASL EQSEGNILEA MEAYKKAITL NPSYYTAINN LAFTHERHLE
LDKAKKLYEE ASTSPEHAVI SNTTLATYCW IDNDIAACEK YLETTIDYST KPYSPKQNKF
IVGYSQFLLA LIENYKLAPI PYLETDAALA PISIAGDSHS LTYANLTIQI ENELYRGAPK
LMTGCKAWHL ANEAENEYKF QFKKLITKQA ENSTLLVSLG EIDCRSDEGI LVAFKKSAKN
KNLSINFKDS KTLAALTNQI RDLTEQYCKY VSEACATKNI QAYLFNVPAP LKANLDEQAL
YELQVLIASY NQSLSESATG FKNISIIDLY SVTNDLNGFS SGKYHIDQVH LSPAICGKIF
GR
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