| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2138 |
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| Symbol | |
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| ID | 3967522 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2729319 |
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| End bp | 2730524 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637921228 |
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| Product | tetratricopeptide repeat protein |
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| Protein accession | YP_527610 |
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| Protein GI | 90021783 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00930218 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATT TGTTGGTTTT TGCAGTCATT CTTGCAGCGC TACTTATTGG TTTTGGTGCG
GGTATCGCCT TCAGCCGAAA ACGCAGGGCG AAGCGCGTAT TCGACCCCGA CGCGTTTTGG
CCCCAGCAAC ATTACTTTAA AGGCTTAACT CAGCTACTTA ACGAAGAGCC AGATGCAGCC
ATAGATACTT TTATATCCTC TATAGATGTT AATTCCGATA CGCTCGAAAC GCATTTAGCC
CTTGGCAGTT TGTTGCGCCG CAAAGGCGAG GTGGAGCGAG CAATTCGTGT GCACCAAAAC
CTCTTATCCC GCAGTAACCT TACTACCGAT CAGCAATACA CAGCCCAAAT GGAATTAGCG
TTAGACTACT TGCGCAGCGG CCTGCTAGAT AGAGCCGAAA TGCTACTTAA AGAGCTAGCC
GACGCCCCTA AAATAAGCAA CCCCATGCGC AAGCGCGCAC TTGAATGCCT AATAGAGCTA
TACCAAGATA TGCGCGAGTG GCTTTCTGCC ATAGATGTAG CAGATAGGCT AACTGCCAGA
AAGTTCTCGG GGCCTGCAGA TAAGTGGCGC CAGCAGCAAG CCCACTACGC GTGCGAAATA
GCGCAAACAG CCATTACGCA AAAAGATTGG CTAACTGCCC GCCGCTGGGT ACGAACAGCC
ATGCGGCACG ATAAAGACTG CGCCCGCGCA AGCTTGCTAA GCGCCCAACT AGATATAGCG
CAAAAAGAAT ATGCTAAAGC GCTTATATCT CTGCGGCAAA TAGTGCAGCA GGATGAGCGC
TATCTCTCCG AAATGTTGCC CTTGGCTTAT AGCTGCCACA AAAAGCTCGA ATCTATGCCT
GTGTTTTTAA ACGAGCTTAG AGCGTTGTAC GAGCACAAGG GCGAACTGCT GGTTTTACGG
TATTTGGCCA AAGCTGTAGA GATGTGTGAG GGCGGGGATG CCGTTATCTC CCTGTTAATG
CAAGAGCTAC CGCAGTACCC GCAAATGGAA GTGGCCGGTG CCCTGTTAAA AATAGTGTTG
GACGAGCGCG GGCCAGCCAG CTTGCGGAAT TATGTACAAG TAAAAGGCCT GCTTAAAAAG
CTAACCGACT CTAAATACCA CTACCAATGC ACCAGCTGTG GCTTTACCGG TGAGCAGCTT
CACTGGTTGT GCCCTAGCTG TAAAAGCTGG GCTTCTCAGC AATACACATC CGTACCGCAT
ATCTAA
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| Protein sequence | MQDLLVFAVI LAALLIGFGA GIAFSRKRRA KRVFDPDAFW PQQHYFKGLT QLLNEEPDAA
IDTFISSIDV NSDTLETHLA LGSLLRRKGE VERAIRVHQN LLSRSNLTTD QQYTAQMELA
LDYLRSGLLD RAEMLLKELA DAPKISNPMR KRALECLIEL YQDMREWLSA IDVADRLTAR
KFSGPADKWR QQQAHYACEI AQTAITQKDW LTARRWVRTA MRHDKDCARA SLLSAQLDIA
QKEYAKALIS LRQIVQQDER YLSEMLPLAY SCHKKLESMP VFLNELRALY EHKGELLVLR
YLAKAVEMCE GGDAVISLLM QELPQYPQME VAGALLKIVL DERGPASLRN YVQVKGLLKK
LTDSKYHYQC TSCGFTGEQL HWLCPSCKSW ASQQYTSVPH I
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