| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2133 |
|---|
| Symbol | |
|---|
| ID | 3967517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2723070 |
|---|
| End bp | 2724125 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637921223 |
|---|
| Product | ATPase |
|---|
| Protein accession | YP_527605 |
|---|
| Protein GI | 90021778 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase |
|---|
| TIGRFAM ID | [TIGR02380] undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0085223 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTAG GATTCGGAAT CCTCGCAGTA GCGTTTGTTA CTGCCTTTGT TGTAGTTAAA
ATGTTAAAGC CAATTGCCTA CCTGGTAAAT TTAGTAGACA AGCCCGGCGG CCGCAAAGAC
CACGACGGCG TAATCCCCTT AATTGGTGGT TTAGCAATTT ACACCAGTGT TTGCATTACC
ACCTTCCTGT TTATAGAGCA GCCAATTTTT ATCCGCTTAT TCCTATTGGC TGGTGGCTTA
ATAGTGTTTA TGGGCATGGT AGACGACCGC TATCAACTTT CTGCGCGGTT TCGTTTGGCT
GGTCAATTTT TAATTGCCTG TATTTTTGTA TACGGCCTAG ATGTACACAT AGAAAGCTTC
GGCGATTTAC TTGGTATAGG CGAGCTTAAT CCTGGTTGGC TTGGCTACCC ATTAGCTGTA
CTTAGTTTAA TGGGCGTAGT AAACGCAATG AACATGCTAG ATGGTATGGA TGGCCTAGTA
GGCTCCATTG CAATGGTAAG CTTTATTGGT TTAATCGGCC TTTTTGGTGC CGCAGGCCAC
ACAACCTTCC AATACCTCTG CTTGGCATTT ACCGGCGCTA TAGCCGCGTT CCTAATTTTT
AACTTATGGG GCAGCCCAAC CAAAAACTTC CGTAAAGTAT TTATGGGTGA TGCTGGCAGC
ATGTTTTTGG GTTTAAGTTT AGGTGTTTTA CTTATAGAGG GTAGCCAGCA ACCTACAGCC
GCGTTTAGCC CTGTAACCGC TCTATGGTTT GTACTGCTAC CTATGACAGA TATGTTCACC
ATTATGTACC GCCGAATAAA AAGAGGGCGG TCGCCAATGG CACCGGATAG GACGCATATA
CATCATATTA TTATTCGGGC TGGGTTTAGT CGTAAGCAGG CGCTTTATAT TGTGCTGGTG
CTTCAATCAA TATTCGTTGT AACAGGTGTG CTTTTGCACA ATTCAACATA TGAGTGGCGA
TCTTTCACTT TGGTTGTAAC TTTCGTGATT GGATACCAGC TATTTATGCG CCGAGCTTGG
CTGTTTGTTA GGTGGAGCAA AAAACGCTTT GCATAG
|
|---|
| Protein sequence | MELGFGILAV AFVTAFVVVK MLKPIAYLVN LVDKPGGRKD HDGVIPLIGG LAIYTSVCIT
TFLFIEQPIF IRLFLLAGGL IVFMGMVDDR YQLSARFRLA GQFLIACIFV YGLDVHIESF
GDLLGIGELN PGWLGYPLAV LSLMGVVNAM NMLDGMDGLV GSIAMVSFIG LIGLFGAAGH
TTFQYLCLAF TGAIAAFLIF NLWGSPTKNF RKVFMGDAGS MFLGLSLGVL LIEGSQQPTA
AFSPVTALWF VLLPMTDMFT IMYRRIKRGR SPMAPDRTHI HHIIIRAGFS RKQALYIVLV
LQSIFVVTGV LLHNSTYEWR SFTLVVTFVI GYQLFMRRAW LFVRWSKKRF A
|
|---|
| |