| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2108 |
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| Symbol | sdhA |
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| ID | 3967492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2694549 |
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| End bp | 2696321 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637921198 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_527580 |
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| Protein GI | 90021753 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.018563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAATA TGAGAACCAT TACATTCGAC GGTATTGTTA TTGGCGGCGG CGGTGCGGGT
ATGCGCGCTG CGTTGCAAAT GGCGCAATCC GGTTTTAAAA CTGCGGTTGT AACTAAAGTA
TTTCCAACTC GCTCGCATAC TGTATCCGCT CAGGGCGGTA TTACTTGCGC TATTGCAAGT
GCCGACCCGC AAGATGATTG GCGCTGGCAC ATGTACGACA CCGTAAAAGG GTCGGACTAC
ATTGGTGACC AGGACGCAAT TGAGTATATG TGCTCTGTGG GCCCAGAAGC TGTGTTTGAA
CTCGAGCACA TGGGTTTGCC TTTCTCTCGT ACTGAGAATG GCCGTATTTA TCAGCGCCCA
TTTGGTGGCC AATCTAAAGA CTTTGGTCGC GGCGGTCAGG CAGCGCGTAC TTGTGCAGCA
GCAGACCGTA CTGGTCACGC TTTGTTGCAC ACCTTGTATC AAGGTAATGT TAAAAATAAC
ACTGTTTTCC TAAACGAGTG GTTTGCGGTT GATTTGGTTA AAAACCAAGA TGGCGCTGTA
TGCGGCGTTA TCGCAATCAA TATGGAAGAC GGTGAAACCG TATTTATTAA GTCTAAAGCG
ACTGTGTTGG CTACTGGTGG TGCAGGGCGT ATTTTCGCAT CTACCACTAA CGCTCACATC
AATACTGGTG ACGGTGTTGG TATGGCGTTG CGCGCTGGCG TACCGGTGCA AGATATCGAA
ATGTGGCAGT TCCACCCAAC CGGTATTCAC GGTGCAGGTG TGCTTGTTAC AGAGGGGTGT
CGCGGTGAAG GTGGCTACTT AGTAAACAAA GACGGCGAGC GCTTTATGGA GCGTTATGCT
CCTAACGCAA AAGACCTTGC TGGTCGTGAC GTTGTAGCTC GCTCTATGGT TCTTGAAATT
CTAGAAGGGC GTGGTTGCGG CGAAAATGCC GATCACGTGT TCTTGAAGCT AGACCATTTG
GGCGCAGACA CGCTAAACGC TAAGTTGCCT GGTATTTTGG AGCTTTCGCG TACATTTGCG
CATGTTGACC CAATTAAAGA CCCAATCCCT GTAGTGCCTA CTTGTCACTA TATGATGGGT
GGTATTCCAA CTAACGTTCA CGGCCAAGCG CTTACTCAAG ATGCTAACGG CAATGATCAA
GTGGTTGAAG GTTTGTACGC TTGTGGTGAA GTGGCTTGTG TATCTGTACA CGGCGCTAAC
CGTTTGGGCG GTAACTCGTT GCTAGATCTT GTTGTATTTG GTCGTGCATC TGGGTTGTTT
ATCGAGAAAT CTCTACGTGA AGGTATTGAG TTGCGCGACC CAAGTGCAAC CGATATGGAT
GCAGCGATGT CTCGTTTGAA CAAAGTAAAT AACTCTACTG GCGGTGAGTC TGCGCCTGCG
CTTCGCACAG AAATGCAGGG TATTATGCAG AACCACTTCG GTGTATTCCG TCGCGGCGAC
ATGATGGAAG TAGGTATTGC TAAGTTGGCA GAAATGCGTG AGCGCATTGC TAACGTAGCG
CTAGAAGATA AGAGCAACGC GTTTAACACT GCTCGTATTG AAGCGCTTGA GCTGCAAAAC
CTGTTTGAAG TTGCTGAAGC CACTGCAATT GCCGCAGAAG TTCGTAAAGA ATCTCGCGGT
GCGCACGCTC GTGATGATTT CCAAGAGCGT GATGATAAAG AATGGTTGTG TCACTCCATG
TATTTCCCAG GGGAAAAACG TGTAGGCAAG CGCGCAGTTA ACTTTTCGCC CAAAACGATG
GAAGCCTTCG AGCCAAAAGC TCGTACTTAC TAG
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| Protein sequence | MANMRTITFD GIVIGGGGAG MRAALQMAQS GFKTAVVTKV FPTRSHTVSA QGGITCAIAS
ADPQDDWRWH MYDTVKGSDY IGDQDAIEYM CSVGPEAVFE LEHMGLPFSR TENGRIYQRP
FGGQSKDFGR GGQAARTCAA ADRTGHALLH TLYQGNVKNN TVFLNEWFAV DLVKNQDGAV
CGVIAINMED GETVFIKSKA TVLATGGAGR IFASTTNAHI NTGDGVGMAL RAGVPVQDIE
MWQFHPTGIH GAGVLVTEGC RGEGGYLVNK DGERFMERYA PNAKDLAGRD VVARSMVLEI
LEGRGCGENA DHVFLKLDHL GADTLNAKLP GILELSRTFA HVDPIKDPIP VVPTCHYMMG
GIPTNVHGQA LTQDANGNDQ VVEGLYACGE VACVSVHGAN RLGGNSLLDL VVFGRASGLF
IEKSLREGIE LRDPSATDMD AAMSRLNKVN NSTGGESAPA LRTEMQGIMQ NHFGVFRRGD
MMEVGIAKLA EMRERIANVA LEDKSNAFNT ARIEALELQN LFEVAEATAI AAEVRKESRG
AHARDDFQER DDKEWLCHSM YFPGEKRVGK RAVNFSPKTM EAFEPKARTY
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